Siddhartha Bagaria
| Snapshot Date: 2018-10-28 16:46:29 -0400 (Sun, 28 Oct 2018) |
| URL: https://git.bioconductor.org/packages/GoogleGenomics |
| Branch: master |
| Last Commit: f58dcd3 |
| Last Changed Date: 2018-08-03 09:09:20 -0400 (Fri, 03 Aug 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2018-10-29 10:29:58 -0400 (Mon, 29 Oct 2018).
| Package 660/1642 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Siddhartha Bagaria
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: GoogleGenomics |
| Version: 2.3.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GoogleGenomics_2.3.2.tar.gz && rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GoogleGenomics.buildbin-libdir GoogleGenomics_2.3.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GoogleGenomics_2.3.2.zip && rm GoogleGenomics_2.3.2.tar.gz GoogleGenomics_2.3.2.zip |
| StartedAt: 2018-10-28 20:50:32 -0400 (Sun, 28 Oct 2018) |
| EndedAt: 2018-10-28 20:51:29 -0400 (Sun, 28 Oct 2018) |
| EllapsedTime: 56.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GoogleGenomics_2.3.2.tar.gz && rm -rf GoogleGenomics.buildbin-libdir && mkdir GoogleGenomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GoogleGenomics.buildbin-libdir GoogleGenomics_2.3.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GoogleGenomics_2.3.2.zip && rm GoogleGenomics_2.3.2.tar.gz GoogleGenomics_2.3.2.zip
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install for i386
* installing *source* package 'GoogleGenomics' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c init.cc -o init.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GoogleGenomics.dll tmp.def init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GoogleGenomics.buildbin-libdir/GoogleGenomics/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GoogleGenomics'
finding HTML links ... done
GoogleGenomics html
authenticate html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpqs7FQs/R.INSTALL17c07cf0113c/GoogleGenomics/man/authenticate.Rd:24: file link 'httpuv' in package 'httpuv' does not exist and so has been treated as a topic
callGRPCMethod html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpqs7FQs/R.INSTALL17c07cf0113c/GoogleGenomics/man/callGRPCMethod.Rd:15: file link 'RProtoBuf' in package 'RProtoBuf' does not exist and so has been treated as a topic
defaultGcloudCredsPath html
getRProtoBufDefaultObject html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpqs7FQs/R.INSTALL17c07cf0113c/GoogleGenomics/man/getRProtoBufDefaultObject.Rd:6: file link 'RProtoBuf' in package 'RProtoBuf' does not exist and so has been treated as a topic
getReads html
getReadsPage html
getSearchPage html
getVariantCalls html
getVariants html
getVariantsPage html
isGRPCAvailable html
readsToGAlignments html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpqs7FQs/R.INSTALL17c07cf0113c/GoogleGenomics/man/readsToGAlignments.Rd:18: file link 'GAlignments' in package 'GenomicAlignments' does not exist and so has been treated as a topic
variantsToGRanges html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpqs7FQs/R.INSTALL17c07cf0113c/GoogleGenomics/man/variantsToGRanges.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
variantsToVRanges html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/Rtmpqs7FQs/R.INSTALL17c07cf0113c/GoogleGenomics/man/variantsToVRanges.Rd:18: file link 'VRanges' in package 'VariantAnnotation' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
Configured public API key.
Warning: Package 'GoogleGenomics' is deprecated and will be removed from
Bioconductor version 3.9
In R CMD INSTALL
install for x64
* installing *source* package 'GoogleGenomics' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c init.cc -o init.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GoogleGenomics.dll tmp.def init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GoogleGenomics.buildbin-libdir/GoogleGenomics/libs/x64
** testing if installed package can be loaded
Configured public API key.
Warning: Package 'GoogleGenomics' is deprecated and will be removed from
Bioconductor version 3.9
* MD5 sums
packaged installation of 'GoogleGenomics' as GoogleGenomics_2.3.2.zip
* DONE (GoogleGenomics)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GoogleGenomics' successfully unpacked and MD5 sums checked
In R CMD INSTALL