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INSTALL report for IrisSpatialFeatures on tokay2

This page was generated on 2018-10-29 10:34:41 -0400 (Mon, 29 Oct 2018).

Package 792/1642HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IrisSpatialFeatures 1.5.2
Daniel Gusenleitner
Snapshot Date: 2018-10-28 16:46:29 -0400 (Sun, 28 Oct 2018)
URL: https://git.bioconductor.org/packages/IrisSpatialFeatures
Branch: master
Last Commit: 4e87ba4
Last Changed Date: 2018-08-03 09:07:35 -0400 (Fri, 03 Aug 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: IrisSpatialFeatures
Version: 1.5.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/IrisSpatialFeatures_1.5.2.tar.gz && rm -rf IrisSpatialFeatures.buildbin-libdir && mkdir IrisSpatialFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IrisSpatialFeatures.buildbin-libdir IrisSpatialFeatures_1.5.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL IrisSpatialFeatures_1.5.2.zip && rm IrisSpatialFeatures_1.5.2.tar.gz IrisSpatialFeatures_1.5.2.zip
StartedAt: 2018-10-28 21:23:26 -0400 (Sun, 28 Oct 2018)
EndedAt: 2018-10-28 21:25:09 -0400 (Sun, 28 Oct 2018)
EllapsedTime: 102.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/IrisSpatialFeatures_1.5.2.tar.gz && rm -rf IrisSpatialFeatures.buildbin-libdir && mkdir IrisSpatialFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IrisSpatialFeatures.buildbin-libdir IrisSpatialFeatures_1.5.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL IrisSpatialFeatures_1.5.2.zip && rm IrisSpatialFeatures_1.5.2.tar.gz IrisSpatialFeatures_1.5.2.zip
###
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install for i386

* installing *source* package 'IrisSpatialFeatures' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c interaction.cpp -o interaction.o
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c masking.cpp -o masking.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o IrisSpatialFeatures.dll tmp.def RcppExports.o interaction.o masking.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/IrisSpatialFeatures.buildbin-libdir/IrisSpatialFeatures/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'IrisSpatialFeatures'
    finding HTML links ... done
    Coordinate-class                        html  
    ImageSet-class                          html  
    IrisSpatialFeatures-package             html  
    IrisSpatialFeatures_data                html  
    Sample-class                            html  
    as.data.frame                           html  
    collapse_markers                        html  
    extract_ROI                             html  
    extract_features                        html  
    extract_interactions                    html  
    extract_mask                            html  
    extract_nearest_neighbor                html  
    extract_proximity                       html  
    feature_selection                       html  
    get_all_interactions                    html  
    get_all_nearest_neighbors               html  
    get_all_proximities                     html  
    get_count_ratios                        html  
    get_counts_per_mm2                      html  
    get_counts_per_mm2_noncollapsed         html  
    get_interactions                        html  
    get_nearest_neighbors                   html  
    get_proximities                         html  
    interaction_maps                        html  
    neighbor_ray_plot                       html  
    overview_plot                           html  
    plot                                    html  
    plot_interactions                       html  
    plot_nearest_neighbor                   html  
    plot_proximities                        html  
    raw_data-class                          html  
    rayplot_single_coordinate               html  
    read_raw                                html  
    threshold_dataset                       html  
** building package indices
** installing vignettes
   'IrisSpatialFeatures.Rmd' using 'UTF-8' 
** testing if installed package can be loaded
Warning: Package 'IrisSpatialFeatures' is deprecated and will be removed from
  Bioconductor version 3.9
In R CMD INSTALL

install for x64

* installing *source* package 'IrisSpatialFeatures' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c interaction.cpp -o interaction.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c masking.cpp -o masking.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o IrisSpatialFeatures.dll tmp.def RcppExports.o interaction.o masking.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/IrisSpatialFeatures.buildbin-libdir/IrisSpatialFeatures/libs/x64
** testing if installed package can be loaded
Warning: Package 'IrisSpatialFeatures' is deprecated and will be removed from
  Bioconductor version 3.9
* MD5 sums
packaged installation of 'IrisSpatialFeatures' as IrisSpatialFeatures_1.5.2.zip
* DONE (IrisSpatialFeatures)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'IrisSpatialFeatures' successfully unpacked and MD5 sums checked
In R CMD INSTALL