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This page was generated on 2025-11-19 10:14 -0500 (Wed, 19 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4827
lconwaymacOS 12.7.6 Montereyx86_64R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" 4600
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4564
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 133/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Banksy 1.7.0  (landing page)
Joseph Lee
Snapshot Date: 2025-11-18 13:40 -0500 (Tue, 18 Nov 2025)
git_url: https://git.bioconductor.org/packages/Banksy
git_branch: devel
git_last_commit: 4bdc545
git_last_commit_date: 2025-10-29 11:27:15 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for Banksy on kjohnson3

To the developers/maintainers of the Banksy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Banksy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Banksy
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Banksy
StartedAt: 2025-11-18 15:50:57 -0500 (Tue, 18 Nov 2025)
EndedAt: 2025-11-18 15:51:53 -0500 (Tue, 18 Nov 2025)
EllapsedTime: 56.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Banksy
###
##############################################################################
##############################################################################


* checking for file ‘Banksy/DESCRIPTION’ ... OK
* preparing ‘Banksy’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘batch-correction.Rmd’ using rmarkdown

Quitting from batch-correction.Rmd:51-57 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection to 'https://raw.githubusercontent.com/LieberInstitute/HumanPilot/master/10X/151507/scalefactors_json.json'
---
Backtrace:
     ▆
  1. └─spatialLIBD::fetch_data(type = "spe", eh = ehub)
  2.   └─spatialLIBD::sce_to_spe(...)
  3.     └─base::lapply(url_scaleFactors, jsonlite::read_json)
  4.       └─jsonlite (local) FUN(X[[i]], ...)
  5.         └─jsonlite::parse_json(...)
  6.           └─jsonlite:::parse_and_simplify(...)
  7.             └─jsonlite:::parseJSON(txt, bigint_as_char)
  8.               └─jsonlite:::parse_con(txt, bigint_as_char)
  9.                 ├─base::open(con, "rb")
 10.                 └─base::open.connection(con, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'batch-correction.Rmd' failed with diagnostics:
cannot open the connection to 'https://raw.githubusercontent.com/LieberInstitute/HumanPilot/master/10X/151507/scalefactors_json.json'
--- failed re-building ‘batch-correction.Rmd’

--- re-building ‘domain-segment.Rmd’ using rmarkdown
--- finished re-building ‘domain-segment.Rmd’

--- re-building ‘multi-sample.Rmd’ using rmarkdown

Quitting from multi-sample.Rmd:46-53 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection to 'https://raw.githubusercontent.com/LieberInstitute/HumanPilot/master/10X/151507/scalefactors_json.json'
---
Backtrace:
     ▆
  1. └─spatialLIBD::fetch_data(type = "spe", eh = ehub)
  2.   └─spatialLIBD::sce_to_spe(...)
  3.     └─base::lapply(url_scaleFactors, jsonlite::read_json)
  4.       └─jsonlite (local) FUN(X[[i]], ...)
  5.         └─jsonlite::parse_json(...)
  6.           └─jsonlite:::parse_and_simplify(...)
  7.             └─jsonlite:::parseJSON(txt, bigint_as_char)
  8.               └─jsonlite:::parse_con(txt, bigint_as_char)
  9.                 ├─base::open(con, "rb")
 10.                 └─base::open.connection(con, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'multi-sample.Rmd' failed with diagnostics:
cannot open the connection to 'https://raw.githubusercontent.com/LieberInstitute/HumanPilot/master/10X/151507/scalefactors_json.json'
--- failed re-building ‘multi-sample.Rmd’

--- re-building ‘parameter-selection.Rmd’ using rmarkdown
2025-11-18 15:51:52.479 R[19868:68983093] XType: Using static font registry.
--- finished re-building ‘parameter-selection.Rmd’

SUMMARY: processing the following files failed:
  ‘batch-correction.Rmd’ ‘multi-sample.Rmd’

Error: Vignette re-building failed.
Execution halted