Multiple platform build/check report for BioC 3.23 - BUILD results for BioTIP on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4827
lconway	macOS 12.7.6 Monterey	x86_64	R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"	4600
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4564
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BioTIP on lconway

To the developers/maintainers of the BioTIP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioTIP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BioTIP

Version: 1.25.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioTIP

StartedAt: 2025-11-18 16:14:33 -0500 (Tue, 18 Nov 2025)

EndedAt: 2025-11-18 16:15:24 -0500 (Tue, 18 Nov 2025)

EllapsedTime: 50.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BioTIP
###
##############################################################################
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* checking for file ‘BioTIP/DESCRIPTION’ ... OK
* preparing ‘BioTIP’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BioTIP.Rmd’ using rmarkdown
2025-11-18 16:14:58.267 R[16576:26039314] XType: Using static font registry.

Quitting from BioTIP.Rmd:331-371 [unnamed-chunk-26]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection to 'https://github.com/ysun98/BioTIPBigData/blob/master/data_Nestorowa.tsv?raw=true'
---
Backtrace:
    ▆
 1. └─utils::read.table(url(githuburl), head = T, sep = "\t", row.names = 1)
 2.   ├─base::open(file, "rt")
 3.   └─base::open.connection(file, "rt")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BioTIP.Rmd' failed with diagnostics:
cannot open the connection to 'https://github.com/ysun98/BioTIPBigData/blob/master/data_Nestorowa.tsv?raw=true'
--- failed re-building ‘BioTIP.Rmd’

SUMMARY: processing the following file failed:
  ‘BioTIP.Rmd’

Error: Vignette re-building failed.
Execution halted