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This page was generated on 2025-12-17 11:35 -0500 (Wed, 17 Dec 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4875
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4589
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 697/2332HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EventPointer 3.19.0  (landing page)
Juan A. Ferrer-Bonsoms
Snapshot Date: 2025-12-16 13:40 -0500 (Tue, 16 Dec 2025)
git_url: https://git.bioconductor.org/packages/EventPointer
git_branch: devel
git_last_commit: b63b3a9
git_last_commit_date: 2025-12-16 11:00:34 -0500 (Tue, 16 Dec 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    ERROR    OK  

BUILD results for EventPointer on kjohnson3

To the developers/maintainers of the EventPointer package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EventPointer.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: EventPointer
Version: 3.19.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EventPointer
StartedAt: 2025-12-16 16:18:22 -0500 (Tue, 16 Dec 2025)
EndedAt: 2025-12-16 16:18:59 -0500 (Tue, 16 Dec 2025)
EllapsedTime: 37.4 seconds
RetCode: 0
Status:   OK  
PackageFile: EventPointer_3.19.0.tar.gz
PackageFileSize: 36.56 MiB

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EventPointer
###
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* checking for file ‘EventPointer/DESCRIPTION’ ... OK
* preparing ‘EventPointer’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventPointerStats_BAM.Rd:41: unknown macro '\Psi'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventPointerStats_BAM.Rd:42: unknown macro '\Delta'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventPointerStats_BAM.Rd:42: unknown macro '\Psi'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventsDetection_BAM.Rd:62: unknown macro '\Psi'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventsDetection_ST.Rd:46: unknown macro '\Psi'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/PrepareBam_EP.Rd:55: unknown macro '\Psi'
* installing the package (it is needed to build vignettes)
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
  NB: this package now depends on R (>= 3.5.0)
  WARNING: Added dependency on R >= 3.5.0 because serialized objects in
  serialize/load version 3 cannot be read in older versions of R.
  File(s) containing such objects:
    ‘EventPointer/data/EventXtrans.rda’ ‘EventPointer/data/Fit.rda’
    ‘EventPointer/data/PSI_boots.rda’ ‘EventPointer/data/PSIss.rda’
    ‘EventPointer/data/SG_RNASeq.rda’
    ‘EventPointer/data/SG_reclassify.rda’ ‘EventPointer/data/TxD.rda’
    ‘EventPointer/inst/extdata/EventsDetection_EPBAM.RData’
    ‘EventPointer/inst/extdata/PSI_boots.RData’
    ‘EventPointer/inst/extdata/SgFC.RData’
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventPointerStats_BAM.Rd:41: unknown macro '\Psi'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventPointerStats_BAM.Rd:42: unknown macro '\Delta'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventPointerStats_BAM.Rd:42: unknown macro '\Psi'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventsDetection_BAM.Rd:62: unknown macro '\Psi'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/EventsDetection_ST.Rd:46: unknown macro '\Psi'
Warning: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpySXYmV/Rbuild182241437976d/EventPointer/man/PrepareBam_EP.Rd:55: unknown macro '\Psi'
* building ‘EventPointer_3.19.0.tar.gz’