| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-11-19 10:14 -0500 (Wed, 19 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4827 |
| lconway | macOS 12.7.6 Monterey | x86_64 | R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" | 4600 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4564 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 784/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GBScleanR 2.5.3 (landing page) Tomoyuki Furuta
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the GBScleanR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GBScleanR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GBScleanR |
| Version: 2.5.3 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GBScleanR |
| StartedAt: 2025-11-18 16:34:51 -0500 (Tue, 18 Nov 2025) |
| EndedAt: 2025-11-18 16:35:24 -0500 (Tue, 18 Nov 2025) |
| EllapsedTime: 33.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GBScleanR
###
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* checking for file ‘GBScleanR/DESCRIPTION’ ... OK
* preparing ‘GBScleanR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BasicUsageOfGBScleanR.rmd’ using rmarkdown
2025-11-18 16:35:11.855 R[26397:70345335] XType: Using static font registry.
Quitting from BasicUsageOfGBScleanR.rmd:821-823 [unnamed-chunk-96]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `seqOptimize()`:
! unused argument (gdsfn = object$filename)
---
Backtrace:
▆
1. ├─GBScleanR::estGeno(gds, node = "filt", iter = 4)
2. └─GBScleanR::estGeno(gds, node = "filt", iter = 4)
3. └─GBScleanR (local) .local(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BasicUsageOfGBScleanR.rmd' failed with diagnostics:
unused argument (gdsfn = object$filename)
--- failed re-building ‘BasicUsageOfGBScleanR.rmd’
SUMMARY: processing the following file failed:
‘BasicUsageOfGBScleanR.rmd’
Error: Vignette re-building failed.
Execution halted