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This page was generated on 2026-03-10 11:33 -0400 (Tue, 10 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4522 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 2847 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2307/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| VariantTools 1.53.0 (landing page) Michael Lawrence
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for VariantTools in R Universe. | ||||||||||||||
|
To the developers/maintainers of the VariantTools package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VariantTools.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: VariantTools |
| Version: 1.53.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data VariantTools |
| StartedAt: 2026-03-09 15:48:10 -0400 (Mon, 09 Mar 2026) |
| EndedAt: 2026-03-09 15:48:11 -0400 (Mon, 09 Mar 2026) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data VariantTools
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* checking for file ‘VariantTools/DESCRIPTION’ ... OK
* preparing ‘VariantTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
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ERROR: dependencies ‘VariantAnnotation’, ‘GenomicFeatures’, ‘rtracklayer’, ‘BSgenome’ are not available for package ‘VariantTools’
Perhaps try a variation of:
install.packages(c('VariantAnnotation', 'GenomicFeatures', 'rtracklayer', 'BSgenome'))
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpT1dfou/Rinstc9f2143e4c2b/VariantTools’
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ERROR: package installation failed