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This page was generated on 2026-05-23 11:35 -0400 (Sat, 23 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4937
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-05-01 r89994) -- "Because it was There" 4639
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1278/2379HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methodical 1.9.0  (landing page)
Richard Heery
Snapshot Date: 2026-05-22 13:45 -0400 (Fri, 22 May 2026)
git_url: https://git.bioconductor.org/packages/methodical
git_branch: devel
git_last_commit: 1387d02
git_last_commit_date: 2026-05-01 10:20:44 -0400 (Fri, 01 May 2026)
nebbiolo2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skipped
See other builds for methodical in R Universe.

BUILD results for methodical on nebbiolo2

To the developers/maintainers of the methodical package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methodical.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: methodical
Version: 1.9.0
Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 methodical
StartedAt: 2026-05-22 18:43:02 -0400 (Fri, 22 May 2026)
EndedAt: 2026-05-22 18:45:32 -0400 (Fri, 22 May 2026)
EllapsedTime: 150.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 methodical
###
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* checking for file ‘methodical/DESCRIPTION’ ... OK
* preparing ‘methodical’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown

Quitting from calculating_methylation_transcription_correlations.Rmd:64-91 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Public
   Resource removed on: 2026-04-28
---
Backtrace:
    ▆
 1. ├─AnnotationHub()[["AH75119"]]
 2. └─AnnotationHub()[["AH75119"]]
 3.   └─AnnotationHub (local) .local(x, i, j = j, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'calculating_methylation_transcription_correlations.Rmd' failed with diagnostics:
Public
   Resource removed on: 2026-04-28
--- failed re-building ‘calculating_methylation_transcription_correlations.Rmd’

--- re-building ‘working_with_meth_rses.Rmd’ using rmarkdown
trying URL 'http://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/chr11.fa.gz'
Content type 'application/x-gzip' length 42966674 bytes (41.0 MB)
==================================================
downloaded 41.0 MB

--- finished re-building ‘working_with_meth_rses.Rmd’

SUMMARY: processing the following file failed:
  ‘calculating_methylation_transcription_correlations.Rmd’

Error: Vignette re-building failed.
Execution halted