| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-12 11:34 -0400 (Thu, 12 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4806 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 4049 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2303/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| variancePartition 1.41.4 (landing page) Gabriel E. Hoffman
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for variancePartition in R Universe. | ||||||||||||||
|
To the developers/maintainers of the variancePartition package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: variancePartition |
| Version: 1.41.4 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition |
| StartedAt: 2026-03-11 17:24:30 -0400 (Wed, 11 Mar 2026) |
| EndedAt: 2026-03-11 17:29:10 -0400 (Wed, 11 Mar 2026) |
| EllapsedTime: 280.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition
###
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* checking for file ‘variancePartition/DESCRIPTION’ ... OK
* preparing ‘variancePartition’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to process help pages)
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘FAQ.Rmd’ using rmarkdown
--- finished re-building ‘FAQ.Rmd’
--- re-building ‘additional_visualization.Rmd’ using rmarkdown
2026-03-11 17:24:40.639 R[55481:130161642] XType: Using static font registry.
--- finished re-building ‘additional_visualization.Rmd’
--- re-building ‘dream.Rmd’ using rmarkdown
--- finished re-building ‘dream.Rmd’
--- re-building ‘errors.Rmd’ using rmarkdown
--- finished re-building ‘errors.Rmd’
--- re-building ‘mvtests.Rmd’ using rmarkdown
--- finished re-building ‘mvtests.Rmd’
--- re-building ‘rnd_effects.Rmd’ using rmarkdown
--- finished re-building ‘rnd_effects.Rmd’
--- re-building ‘variancePartition.Rmd’ using rmarkdown
Quitting from variancePartition.Rmd:617-659 [ballgown]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'ballgown'
---
Backtrace:
▆
1. └─base::library("ballgown")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'variancePartition.Rmd' failed with diagnostics:
there is no package called 'ballgown'
--- failed re-building ‘variancePartition.Rmd’
SUMMARY: processing the following file failed:
‘variancePartition.Rmd’
Error: Vignette re-building failed.
Execution halted