Back to Long Tests report for BioC 3.22

This page was generated on 2025-07-12 23:55 -0400 (Sat, 12 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4783
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4520
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4564
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/29HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-07-12 09:55 -0400 (Sat, 12 Jul 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  OK  
palomino8Windows Server 2022 Datacenter / x64  OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbChebi on lconway

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-07-12 16:01:10 -0400 (Sat, 12 Jul 2025)
EndedAt: 2025-07-12 16:02:48 -0400 (Sat, 12 Jul 2025)
EllapsedTime: 98.4 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-07-12 16:01:51.734][biodb::testContext]
biodb.INFO [2025-07-12 16:01:51.736][biodb::testContext] ********************************************************************************
biodb.INFO [2025-07-12 16:01:51.737][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-07-12 16:01:51.738][biodb::testContext] ********************************************************************************
biodb.INFO [2025-07-12 16:01:51.739][biodb::testContext]
biodb.INFO [2025-07-12 16:01:51.744][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-07-12 16:01:51.745][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-07-12 16:01:51.751][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-07-12 16:01:51.752][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-07-12 16:01:51.753][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-07-12 16:01:51.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.756][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-07-12 16:01:51.772][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-07-12 16:01:51.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.775][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-07-12 16:01:51.776][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-07-12 16:01:51.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.779][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-07-12 16:01:51.780][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-07-12 16:01:51.781][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-07-12 16:01:51.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.784][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-07-12 16:01:51.785][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-07-12 16:01:51.786][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-07-12 16:01:51.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.789][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-07-12 16:01:51.789][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-07-12 16:01:51.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.792][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-07-12 16:01:51.793][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-07-12 16:01:51.794][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-07-12 16:01:51.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.797][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-07-12 16:01:51.798][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-07-12 16:01:51.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.801][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-07-12 16:01:51.802][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-07-12 16:01:51.803][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-07-12 16:01:51.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.806][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-07-12 16:01:51.807][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-07-12 16:01:51.808][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-07-12 16:01:51.809][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-07-12 16:01:51.809][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-07-12 16:01:51.810][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-07-12 16:01:51.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.813][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-07-12 16:01:51.814][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-07-12 16:01:51.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.818][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-07-12 16:01:51.818][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-07-12 16:01:51.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.822][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-07-12 16:01:51.822][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-07-12 16:01:51.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.826][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-07-12 16:01:51.826][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-07-12 16:01:51.828][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-07-12 16:01:51.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.831][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-07-12 16:01:51.832][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-07-12 16:01:51.852][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-07-12 16:01:51.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.855][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-07-12 16:01:51.856][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-07-12 16:01:51.857][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-07-12 16:01:51.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:51.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:51.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:51.863][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-07-12 16:01:51.896][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.910][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-07-12 16:01:51.911][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.912][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:51.913][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.914][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.914][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.915][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.916][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-07-12 16:01:51.917][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:51.918][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.919][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-07-12 16:01:51.920][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:51.921][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.921][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.922][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-07-12 16:01:51.922][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-07-12 16:01:51.922][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-07-12 16:01:51.922][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-07-12 16:01:51.922][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-07-12 16:01:51.923][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-12 16:01:51.924][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:51.925][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:51.926][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:51.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:51.927][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:51.928][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.929][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.930][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:51.930][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:51.931][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.932][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.933][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-07-12 16:01:51.935][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.935][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-07-12 16:01:51.936][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.937][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:51.938][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.939][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.940][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.941][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.942][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-07-12 16:01:51.942][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:51.943][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.944][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-07-12 16:01:51.945][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:51.946][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.947][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.948][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-07-12 16:01:51.948][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-07-12 16:01:51.948][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-07-12 16:01:51.948][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-07-12 16:01:51.948][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-07-12 16:01:51.949][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-12 16:01:51.950][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:51.950][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:51.951][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:51.952][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:51.953][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:51.954][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.955][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.956][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:51.957][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:51.957][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.958][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.959][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-07-12 16:01:51.961][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.962][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-07-12 16:01:51.962][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.963][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:51.964][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.965][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.966][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.967][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.968][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-07-12 16:01:51.968][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:51.969][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.970][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-07-12 16:01:51.971][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:51.972][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.973][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.973][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.974][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-12 16:01:51.975][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:51.976][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:51.977][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:51.977][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:51.978][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:51.979][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.980][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.981][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:51.981][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:51.982][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.983][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.984][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-07-12 16:01:51.986][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.986][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-07-12 16:01:51.987][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.988][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:51.989][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.990][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.991][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.992][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-07-12 16:01:51.993][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-07-12 16:01:51.993][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:51.994][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:51.995][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-07-12 16:01:51.996][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:51.997][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.998][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:51.999][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:51.999][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-07-12 16:01:52.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:52.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:52.002][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:52.003][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:52.004][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:52.004][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:52.005][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:52.006][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:52.007][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:52.008][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:52.009][self$setPropertyValue]
biodb.DEBUG[2025-07-12 16:01:52.012][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-07-12 16:01:52.013][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.080][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-07-12 16:01:52.084][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-07-12 16:01:52.085][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-07-12 16:01:52.086][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-07-12 16:01:52.088][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-07-12 16:01:52.089][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-07-12 16:01:52.090][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-07-12 16:01:52.091][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-07-12 16:01:52.092][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-07-12 16:01:52.094][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-07-12 16:01:52.095][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-07-12 16:01:52.096][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-07-12 16:01:52.097][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-07-12 16:01:52.098][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-07-12 16:01:52.099][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-07-12 16:01:52.101][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-07-12 16:01:52.102][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-07-12 16:01:52.103][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-07-12 16:01:52.104][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-07-12 16:01:52.105][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-07-12 16:01:52.106][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-07-12 16:01:52.108][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-07-12 16:01:52.109][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-07-12 16:01:52.110][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-07-12 16:01:52.111][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-07-12 16:01:52.112][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-07-12 16:01:52.114][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-07-12 16:01:52.115][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-07-12 16:01:52.116][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-07-12 16:01:52.117][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-07-12 16:01:52.118][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-07-12 16:01:52.120][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-07-12 16:01:52.121][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-07-12 16:01:52.122][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-07-12 16:01:52.123][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-07-12 16:01:52.124][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-07-12 16:01:52.125][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-07-12 16:01:52.127][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-07-12 16:01:52.128][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-07-12 16:01:52.129][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-07-12 16:01:52.130][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-07-12 16:01:52.131][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-07-12 16:01:52.132][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-07-12 16:01:52.134][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-07-12 16:01:52.135][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-07-12 16:01:52.136][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-07-12 16:01:52.137][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-07-12 16:01:52.138][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-07-12 16:01:52.140][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-07-12 16:01:52.141][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-07-12 16:01:52.142][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-07-12 16:01:52.143][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-07-12 16:01:52.144][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-07-12 16:01:52.145][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-07-12 16:01:52.147][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-07-12 16:01:52.148][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-07-12 16:01:52.149][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-07-12 16:01:52.150][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-07-12 16:01:52.151][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-07-12 16:01:52.153][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-07-12 16:01:52.154][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-07-12 16:01:52.155][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-07-12 16:01:52.156][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-07-12 16:01:52.157][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-07-12 16:01:52.159][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-07-12 16:01:52.160][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-07-12 16:01:52.161][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-07-12 16:01:52.162][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-07-12 16:01:52.163][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-07-12 16:01:52.165][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-07-12 16:01:52.166][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-07-12 16:01:52.167][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-07-12 16:01:52.168][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-07-12 16:01:52.169][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-07-12 16:01:52.171][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-07-12 16:01:52.172][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-07-12 16:01:52.173][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-07-12 16:01:52.174][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-07-12 16:01:52.176][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-07-12 16:01:52.177][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-07-12 16:01:52.178][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-07-12 16:01:52.179][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-07-12 16:01:52.180][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-07-12 16:01:52.186][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-07-12 16:01:52.187][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-07-12 16:01:52.190][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-07-12 16:01:52.191][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.192][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-07-12 16:01:52.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:52.292][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-07-12 16:01:52.300][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-07-12 16:01:52.302][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:52.302][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-07-12 16:01:52.303][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:52.304][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-07-12 16:01:52.305][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:52.306][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-07-12 16:01:52.307][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:52.308][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-07-12 16:01:52.308][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-07-12 16:01:52.309][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-07-12 16:01:52.310][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:52.311][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-07-12 16:01:52.312][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-07-12 16:01:52.313][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-07-12 16:01:52.314][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-07-12 16:01:52.315][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-07-12 16:01:52.315][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-07-12 16:01:52.315][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-07-12 16:01:52.316][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-07-12 16:01:52.317][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:52.317][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:52.318][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-07-12 16:01:52.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-07-12 16:01:52.320][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-07-12 16:01:52.321][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-07-12 16:01:52.322][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-07-12 16:01:52.322][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-07-12 16:01:52.323][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-07-12 16:01:52.323][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-07-12 16:01:52.324][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-07-12 16:01:52.325][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-07-12 16:01:52.325][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-07-12 16:01:52.330][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-07-12 16:01:52.332][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-07-12 16:01:52.333][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-07-12 16:01:52.334][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-07-12 16:01:52.336][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-07-12 16:01:52.337][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-07-12 16:01:52.357][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-07-12 16:01:52.403][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-07-12 16:01:52.417][biodb::testThat]
biodb.INFO [2025-07-12 16:01:52.418][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-07-12 16:01:52.419][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:52.420][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:52.423][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-07-12 16:01:52.425][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:52.427][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:52.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:52.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:52.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:52.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:52.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:52.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:52.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:52.460][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.477][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.507][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.522][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.522][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.524][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.532][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:52.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.536][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.539][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.540][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:52.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.551][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.559][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.566][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:52.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:52.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:52.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:52.642][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-07-12 16:01:52.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:52.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:52.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:52.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.695][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:52.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:52.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.777][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.779][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:52.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:52.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.805][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:52.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.832][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:52.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:52.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.857][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:52.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.882][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.883][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:52.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.922][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.926][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.933][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:52.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.951][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.955][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.991][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.992][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.993][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:52.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.017][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.043][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.045][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.095][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.107][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.109][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.114][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.115][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.121][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.135][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.143][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.147][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.148][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.155][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.156][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.158][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.162][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.165][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.170][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.171][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.177][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.184][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.185][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.203][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-07-12 16:01:53.232][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:53.233][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:53.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:53.247][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.272][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.274][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.280][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.289][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.302][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.303][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.309][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.313][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.324][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.327][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.332][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.332][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.334][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:53.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.340][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.341][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:53.381][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-07-12 16:01:53.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.424][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:53.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:53.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.427][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:53.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:53.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:53.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:53.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.544][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.566][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.567][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.569][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.591][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.605][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.616][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.619][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.640][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.641][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.669][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.672][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.687][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.691][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.698][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.699][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.720][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.723][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.726][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.742][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.750][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.752][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.774][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.807][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.833][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.845][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.853][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.861][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.865][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.879][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.886][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.893][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.895][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:53.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.902][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.907][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:53.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.914][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:53.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:53.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.922][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:53.923][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:53.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.929][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-07-12 16:01:53.931][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:01:53.932][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:53.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:53.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:53.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:53.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:53.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:53.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:53.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:53.944][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.947][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:53.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:53.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.951][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.952][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.959][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:53.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:53.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.963][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.966][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:53.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:53.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:53.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.985][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.988][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.992][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.994][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:53.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.001][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.006][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.007][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.013][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.014][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.016][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.020][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.021][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.061][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-07-12 16:01:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.084][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:54.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:54.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:54.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.095][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:54.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:54.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.171][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.173][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.254][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.266][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.273][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.302][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.353][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.354][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.356][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.383][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.384][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.387][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.409][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.411][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.434][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.436][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.449][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.452][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.457][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.459][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.465][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.495][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.499][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.512][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.513][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.520][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.532][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.533][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.534][ef$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:54.543][biodb::testThat]
biodb.INFO [2025-07-12 16:01:54.544][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-07-12 16:01:54.545][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:54.545][biodb::testThat]
biodb.DEBUG[2025-07-12 16:01:54.547][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-07-12 16:01:54.591][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-07-12 16:01:54.594][cch$loadContents] Load 3 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:01:54.599][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-07-12 16:01:54.603][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-07-12 16:01:54.607][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-07-12 16:01:54.608][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:01:54.609][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-07-12 16:01:54.610][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-07-12 16:01:54.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.624][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.631][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.632][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.639][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.640][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.654][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.656][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.661][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.668][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.682][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.689][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.690][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.692][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.693][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.697][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.743][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.751][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.758][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.760][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.765][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.768][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.775][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.780][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.781][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.782][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.787][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.801][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.808][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.816][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.817][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:54.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:54.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:54.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:54.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:54.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:54.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:54.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:01:54.864][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.872][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.873][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:01:54.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:01:54.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.879][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.880][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:01:54.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:01:54.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.886][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.887][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:54.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.904][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:01:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.908][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.911][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:01:54.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:54.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:54.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.922][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:54.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:54.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.929][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.930][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.933][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:01:54.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:01:54.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.937][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:01:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:01:54.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:01:54.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:54.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:54.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:01:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:01:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.004][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-07-12 16:01:55.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:55.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:55.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:55.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-07-12 16:01:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-07-12 16:01:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-07-12 16:01:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:55.052][biodb::testThat]
biodb.INFO [2025-07-12 16:01:55.053][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-07-12 16:01:55.054][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:55.055][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:55.057][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.060][ef$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.061][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-07-12 16:01:55.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:01:55.099][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-07-12 16:01:55.104][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-07-12 16:01:55.126][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:01:55.131][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-07-12 16:01:55.132][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:01:55.148][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:55.174][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:01:55.177][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:55.178][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:55.180][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-07-12 16:01:55.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:55.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.196][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.197][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.199][ef$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:55.204][biodb::testThat]
biodb.INFO [2025-07-12 16:01:55.205][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-07-12 16:01:55.206][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:55.207][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:55.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:55.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:55.291][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:55.293][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:01:55.296][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:55.297][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-07-12 16:01:55.313][biodb::testThat]
biodb.INFO [2025-07-12 16:01:55.314][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-07-12 16:01:55.315][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:55.316][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:55.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:55.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.346][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:55.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:55.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:55.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:55.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:55.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:01:55.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:01:55.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:01:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:55.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:55.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-07-12 16:01:55.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-07-12 16:01:55.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:55.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-07-12 16:01:55.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:55.405][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:55.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-07-12 16:01:55.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:55.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:55.414][biodb::testThat]
biodb.INFO [2025-07-12 16:01:55.415][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-07-12 16:01:55.416][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:55.417][biodb::testThat]
biodb.INFO [2025-07-12 16:01:55.425][biodb::testThat]
biodb.INFO [2025-07-12 16:01:55.426][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-07-12 16:01:55.427][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:55.428][biodb::testThat]
biodb.INFO [2025-07-12 16:01:55.436][biodb::testThat]
biodb.INFO [2025-07-12 16:01:55.436][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-07-12 16:01:55.437][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:55.438][biodb::testThat]
biodb.DEBUG[2025-07-12 16:01:55.442][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-07-12 16:01:57.574][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-07-12 16:01:59.722][biodb::testThat]
biodb.INFO [2025-07-12 16:01:59.723][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-07-12 16:01:59.724][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:59.724][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:59.730][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.733][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:01:59.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.736][ef$get] fields variable is a list.
biodb.INFO [2025-07-12 16:01:59.737][biodb::testThat]
biodb.INFO [2025-07-12 16:01:59.738][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-07-12 16:01:59.739][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:01:59.740][biodb::testThat]
biodb.TRACE[2025-07-12 16:01:59.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:01:59.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:01:59.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:59.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:59.843][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:01:59.845][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:59.846][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:01:59.914][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:59.917][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:01:59.919][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:01:59.920][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-07-12 16:01:59.933][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:01:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:01:59.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:01:59.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:01:59.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:01:59.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:01:59.965][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:01:59.967][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:01:59.969][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:01:59.970][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:01:59.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:01:59.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:01:59.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:01:59.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:01:59.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:01:59.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:01:59.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:01:59.986][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-07-12 16:02:00.021][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:00.022][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:00.025][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-07-12 16:02:00.026][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.027][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:00.028][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:00.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.039][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.045][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.046][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.048][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.049][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.052][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.053][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.054][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.083][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.087][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.088][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.090][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:00.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.104][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.106][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.110][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.111][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.113][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.117][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:00.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:00.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.119][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:00.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:00.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.155][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-07-12 16:02:00.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:00.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:00.175][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:00.177][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:00.178][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:00.223][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-07-12 16:02:00.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:00.225][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:00.228][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-07-12 16:02:00.229][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.230][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:00.231][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:00.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.243][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.245][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.252][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.255][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.270][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.276][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.278][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:00.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:00.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.285][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.295][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.301][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.302][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.305][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:00.309][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:00.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:00.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:00.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.344][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-07-12 16:02:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:00.371][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:00.373][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:00.375][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:02:00.376][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:00.410][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-07-12 16:02:00.411][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:00.412][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:00.414][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-07-12 16:02:00.415][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.416][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:00.417][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:00.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.428][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.430][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.435][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.437][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.438][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.444][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.447][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.448][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.449][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.450][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.451][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:00.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.458][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.464][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.467][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.471][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:00.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:00.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.512][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-07-12 16:02:00.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:00.538][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-07-12 16:02:00.539][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:00.540][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:00.543][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-07-12 16:02:00.544][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.544][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:00.545][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:00.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.558][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.565][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.568][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.569][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.571][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.579][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.580][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.581][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:00.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.587][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.593][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.594][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.595][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.596][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.600][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:00.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:00.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.641][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-07-12 16:02:00.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:00.667][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-07-12 16:02:00.668][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:00.669][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:00.672][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-07-12 16:02:00.673][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.674][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:00.675][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:00.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.693][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.694][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.697][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.697][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.701][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.706][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.707][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.708][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.710][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:00.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.717][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.724][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.729][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.731][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.735][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:00.736][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:00.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.771][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-07-12 16:02:00.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:00.797][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-07-12 16:02:00.798][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:00.799][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:00.803][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-07-12 16:02:00.804][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.805][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:00.805][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:00.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.817][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.819][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.824][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.825][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.826][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.831][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.833][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.845][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.852][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:00.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.858][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.859][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:00.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.862][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:00.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.865][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.866][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:00.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:00.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.875][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:00.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.882][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.882][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.885][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:00.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:00.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:00.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:00.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:00.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:00.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:00.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.927][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-07-12 16:02:00.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:00.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:00.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:00.952][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-07-12 16:02:00.953][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:00.954][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:00.957][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-07-12 16:02:00.958][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:00.959][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:00.960][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:00.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:00.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:00.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:00.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:00.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:00.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:00.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:00.972][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.975][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:00.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:00.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.979][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.980][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.982][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.983][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:00.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:00.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.986][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.989][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:00.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:00.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:00.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:00.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:00.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:00.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.009][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.010][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.011][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.015][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.018][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.021][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.028][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.035][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.036][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.038][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.043][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.087][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-07-12 16:02:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:01.108][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-07-12 16:02:01.108][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:01.109][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:01.112][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-07-12 16:02:01.113][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.114][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:01.115][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:01.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.126][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.129][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.133][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.135][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.139][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.142][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.155][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.160][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.161][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.162][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.163][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.166][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.172][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.178][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.182][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.185][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.190][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.197][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.198][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.237][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-07-12 16:02:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:01.259][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-07-12 16:02:01.259][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:01.261][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:01.264][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-07-12 16:02:01.265][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.266][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:01.267][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:01.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.279][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.291][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.298][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.319][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.320][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.322][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.323][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.326][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.343][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.344][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.350][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.350][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.352][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.389][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-07-12 16:02:01.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:01.413][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-07-12 16:02:01.414][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:01.416][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:01.419][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-07-12 16:02:01.419][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.420][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:01.421][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:01.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.432][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.439][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.440][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.441][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.442][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.445][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.452][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.465][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.468][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.469][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.470][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.471][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.474][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.477][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.481][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.488][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.491][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.535][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-07-12 16:02:01.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:01.555][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-07-12 16:02:01.555][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:01.557][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:01.560][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-07-12 16:02:01.561][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.562][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:01.562][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:01.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.576][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.580][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.581][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.587][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.601][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.612][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.613][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.615][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.629][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.630][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.631][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.636][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.636][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.638][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.639][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.643][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.678][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-07-12 16:02:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:01.696][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-07-12 16:02:01.697][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:01.698][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:01.701][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-07-12 16:02:01.702][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.703][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:01.703][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:01.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.720][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.722][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.726][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.727][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.733][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.748][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.752][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.753][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.756][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.758][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.759][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.765][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.769][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.772][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.776][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.777][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.779][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.780][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.824][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-07-12 16:02:01.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:01.844][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-07-12 16:02:01.844][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:01.846][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:01.848][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-07-12 16:02:01.849][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:01.850][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:01.851][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:01.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:01.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:01.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:01.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:01.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:01.863][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.865][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.870][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.872][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:01.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:01.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:01.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.884][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:01.885][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:01.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.887][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.888][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:01.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.891][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:01.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.894][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.895][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:01.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:01.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.909][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:01.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:01.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.917][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:01.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:01.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.935][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:01.936][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:01.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:01.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:01.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:01.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.982][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-07-12 16:02:01.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:01.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:01.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:01.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:01.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:01.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:01.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.006][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-07-12 16:02:02.007][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.008][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.011][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-07-12 16:02:02.012][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.013][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.014][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.026][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.032][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.033][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.034][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.038][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.047][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.051][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.059][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.066][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.072][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.078][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.079][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.085][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.087][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.121][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-07-12 16:02:02.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.140][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-07-12 16:02:02.141][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.142][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.145][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-07-12 16:02:02.146][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.147][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.148][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.164][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.166][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.177][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.199][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.200][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.202][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.205][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.219][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.220][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.221][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.225][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.226][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.268][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-07-12 16:02:02.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.287][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-07-12 16:02:02.288][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.289][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.292][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-07-12 16:02:02.293][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.294][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.295][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.307][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.320][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.332][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.333][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.334][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.338][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.339][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.340][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.341][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.344][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.347][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.349][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.353][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.354][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.356][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.360][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.361][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.362][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.411][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-07-12 16:02:02.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.429][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-07-12 16:02:02.429][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.431][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.434][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-07-12 16:02:02.435][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.436][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.437][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.447][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.448][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.450][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.454][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.455][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.456][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.460][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.478][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.488][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.492][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.510][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.511][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.517][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.518][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.559][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-07-12 16:02:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.583][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-07-12 16:02:02.584][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.586][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.590][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-07-12 16:02:02.592][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.601][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.620][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.621][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.624][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.632][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.635][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.640][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.668][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.671][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.672][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.678][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.683][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.685][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.690][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.691][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.701][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.754][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-07-12 16:02:02.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.778][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-07-12 16:02:02.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.780][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.784][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-07-12 16:02:02.785][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.786][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.787][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.802][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.806][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.807][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.808][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.812][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.818][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.820][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.824][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.826][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.830][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.831][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.833][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.836][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.846][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.858][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.859][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:02.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:02.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.866][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:02.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:02.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.901][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-07-12 16:02:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:02.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:02.920][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-07-12 16:02:02.921][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:02.922][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:02.925][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-07-12 16:02:02.926][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:02.927][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:02.928][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:02.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:02.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:02.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:02.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:02.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:02.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:02.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:02.939][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.940][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.945][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.946][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.952][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.959][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:02.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:02.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.967][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:02.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:02.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:02.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.977][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.977][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:02.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.979][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.980][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.982][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.986][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.987][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.989][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:02.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.993][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:02.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:02.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:02.999][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.007][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.044][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-07-12 16:02:03.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:03.068][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-07-12 16:02:03.069][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:03.070][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:03.074][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-07-12 16:02:03.075][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.076][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:03.077][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:03.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.088][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.090][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.095][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.095][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.101][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.103][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.109][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.115][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.121][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.122][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.124][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.125][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.127][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.128][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.131][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.133][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.137][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.139][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.143][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.144][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.149][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.194][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-07-12 16:02:03.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:03.222][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:03.224][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:03.227][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:02:03.228][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:03.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:03.695][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:03.698][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-07-12 16:02:03.699][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:03.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:03.703][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:03.705][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-07-12 16:02:03.706][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:03.723][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-07-12 16:02:03.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:03.725][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:03.728][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-07-12 16:02:03.729][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.730][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:03.731][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:03.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.742][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.744][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.749][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.749][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.751][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.752][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.755][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.757][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.758][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.764][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.771][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.775][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.778][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.779][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.782][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.785][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.789][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.795][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.798][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.802][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.803][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.850][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-07-12 16:02:03.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:03.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:03.888][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-07-12 16:02:03.889][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:03.890][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:03.892][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-07-12 16:02:03.893][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:03.894][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:03.895][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:03.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:03.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:03.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:03.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:03.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:03.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:03.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:03.906][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.908][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.912][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:03.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:03.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.919][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.920][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.931][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:03.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.937][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.938][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:03.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.943][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.944][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:03.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.947][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.950][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:03.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:03.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:03.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.960][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:03.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.967][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:03.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.974][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.975][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:03.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:03.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:03.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:03.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:03.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.011][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-07-12 16:02:04.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:04.044][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:04.046][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:04.049][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:02:04.050][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:04.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:04.492][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:04.494][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:04.497][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-07-12 16:02:04.498][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:04.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:04.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:04.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:04.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:04.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:04.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:04.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:04.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:04.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:04.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:04.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:04.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.047][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:05.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:05.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:05.058][biodb::testThat]
biodb.INFO [2025-07-12 16:02:05.059][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-07-12 16:02:05.060][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:02:05.061][biodb::testThat]
biodb.TRACE[2025-07-12 16:02:05.063][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:05.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:05.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:05.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:05.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:05.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:05.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:05.129][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:05.130][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:05.131][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:05.151][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:05.153][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:05.155][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:05.156][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.195][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:05.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.212][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.212][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.220][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.222][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.226][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:02:05.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.261][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.270][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.271][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.275][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:05.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.303][private$selectFields]
biodb.TRACE[2025-07-12 16:02:05.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:05.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:05.305][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.308][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.313][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:05.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.317][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:05.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:02:05.329][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:05.330][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:05.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:05.348][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:05.350][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:05.352][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:05.353][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:05.364][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-07-12 16:02:05.365][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:05.366][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:05.369][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml.
biodb.DEBUG[2025-07-12 16:02:05.369][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.370][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:05.371][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:05.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.383][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.384][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.385][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.390][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.391][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.392][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.397][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.406][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.416][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.417][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.419][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.420][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:05.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.422][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.423][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:05.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.428][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.433][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:05.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:05.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:05.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.439][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:05.440][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:05.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.441][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:05.446][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:05.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:05.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:05.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.484][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-07-12 16:02:05.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:05.505][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-07-12 16:02:05.506][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:05.507][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:05.510][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml.
biodb.DEBUG[2025-07-12 16:02:05.511][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.512][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:05.513][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:05.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.524][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.531][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.531][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.534][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.539][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.550][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.551][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.559][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.560][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:05.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.562][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.563][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:05.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.569][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.573][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:05.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:05.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:05.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:05.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.580][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:05.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:05.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.583][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:05.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:05.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.587][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:05.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:05.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:05.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:05.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.630][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-07-12 16:02:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:05.641][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:05.643][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:05.646][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:05.647][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:05.658][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-07-12 16:02:05.659][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:05.660][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:05.664][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml.
biodb.DEBUG[2025-07-12 16:02:05.665][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.666][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:05.667][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:05.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.678][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.684][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.685][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.686][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.687][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.690][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.692][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.705][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.710][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.712][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.716][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:05.717][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.720][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:05.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.729][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:05.730][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:05.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:05.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:05.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.736][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:05.737][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:05.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:05.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:05.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.743][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:05.744][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:05.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:05.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:05.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.781][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-07-12 16:02:05.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:05.801][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-07-12 16:02:05.801][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:05.802][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:05.807][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml.
biodb.DEBUG[2025-07-12 16:02:05.807][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.808][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:05.809][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:05.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.827][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.827][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.833][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.834][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.853][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.860][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:05.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.863][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:05.864][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.866][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:05.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.872][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:05.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.877][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:05.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:05.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:05.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.884][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:05.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:05.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:05.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.890][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:05.891][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:05.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:05.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:05.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:05.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.925][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-07-12 16:02:05.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:05.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:05.946][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-07-12 16:02:05.946][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:05.948][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:05.952][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml.
biodb.DEBUG[2025-07-12 16:02:05.953][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:05.955][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:05.956][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:05.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:05.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:05.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:05.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:05.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:05.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:05.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:05.969][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.971][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:05.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.975][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.978][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:05.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:05.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.982][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.983][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:05.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:05.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.995][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.996][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:05.997][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:05.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:05.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.002][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.003][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.005][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.009][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.025][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.026][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.029][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.032][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.032][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.034][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.070][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-07-12 16:02:06.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.102][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:06.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.135][private$selectFields]
biodb.TRACE[2025-07-12 16:02:06.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:06.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:06.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.140][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.143][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.145][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.147][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.149][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:06.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:06.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.175][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.176][private$selectFields]
biodb.TRACE[2025-07-12 16:02:06.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:06.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:06.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.181][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.185][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.187][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.188][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.189][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.199][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:06.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.217][private$selectFields]
biodb.TRACE[2025-07-12 16:02:06.217][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:06.218][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:06.219][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.227][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:06.228][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.231][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:06.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.242][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:06.242][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:06.243][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:06.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:06.255][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:06.258][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:06.260][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:06.261][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:06.272][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-07-12 16:02:06.273][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:06.274][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:06.277][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml.
biodb.DEBUG[2025-07-12 16:02:06.278][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.279][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:06.279][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:06.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.292][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.294][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.299][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.301][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.305][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.308][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.326][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.326][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.329][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.343][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.354][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.355][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.356][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.363][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.398][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-07-12 16:02:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:06.419][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-07-12 16:02:06.419][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:06.421][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:06.423][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml.
biodb.DEBUG[2025-07-12 16:02:06.424][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.425][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:06.426][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:06.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.437][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.444][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.445][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.446][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.447][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.451][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.465][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.471][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.472][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.474][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.476][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.477][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.495][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.501][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.502][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.541][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-07-12 16:02:06.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:06.561][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-07-12 16:02:06.562][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:06.563][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:06.566][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml.
biodb.DEBUG[2025-07-12 16:02:06.567][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.568][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:06.568][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:06.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.580][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.581][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.587][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.588][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.591][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.594][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.595][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.608][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.619][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.620][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.622][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.631][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.635][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.638][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.642][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.643][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.645][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.648][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.649][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.650][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.684][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-07-12 16:02:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:06.704][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-07-12 16:02:06.705][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:06.706][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:06.709][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml.
biodb.DEBUG[2025-07-12 16:02:06.710][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.711][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:06.712][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:06.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.723][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.725][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.729][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.730][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.733][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.736][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.737][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.743][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.744][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.745][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.750][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.752][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.757][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.758][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.759][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.766][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.766][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.768][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.772][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.775][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.779][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.782][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.825][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-07-12 16:02:06.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:06.845][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-07-12 16:02:06.846][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:06.847][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:06.849][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml.
biodb.DEBUG[2025-07-12 16:02:06.855][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.856][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:06.857][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:06.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:06.868][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.875][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.876][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:06.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:06.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:06.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:06.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:06.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:06.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.903][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.906][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:06.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.910][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:06.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.916][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:06.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:06.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.923][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:06.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:06.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.929][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.930][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.931][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:06.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:06.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:06.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:06.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.968][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-07-12 16:02:06.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:06.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:06.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:06.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:06.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:06.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:06.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:06.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:06.988][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-07-12 16:02:06.989][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:06.990][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:06.993][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml.
biodb.DEBUG[2025-07-12 16:02:06.993][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:06.994][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:06.995][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:06.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:06.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:06.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.007][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.013][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.019][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.025][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.026][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.032][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.039][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.039][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.042][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.043][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.045][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.048][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.050][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.055][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.055][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.057][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.061][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.062][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.063][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.109][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-07-12 16:02:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.127][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-07-12 16:02:07.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.129][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.132][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml.
biodb.DEBUG[2025-07-12 16:02:07.133][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.134][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.135][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.145][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.146][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.147][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.152][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.157][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.166][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.173][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.180][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.193][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.200][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.207][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.245][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-07-12 16:02:07.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.268][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-07-12 16:02:07.269][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.271][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.273][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml.
biodb.DEBUG[2025-07-12 16:02:07.274][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.275][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.276][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.289][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.290][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.296][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.296][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.302][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.311][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.322][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.322][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.325][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.327][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.328][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.332][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.334][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.338][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.341][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.345][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.346][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.356][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.358][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.393][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-07-12 16:02:07.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:07.404][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:07.406][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:07.408][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:07.409][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.438][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-07-12 16:02:07.439][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.440][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.444][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml.
biodb.DEBUG[2025-07-12 16:02:07.445][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.446][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.446][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.457][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.464][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.467][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.471][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.491][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.492][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.495][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.495][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.515][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.524][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.561][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-07-12 16:02:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:07.581][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-07-12 16:02:07.582][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:07.583][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:07.586][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml.
biodb.DEBUG[2025-07-12 16:02:07.587][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.588][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:07.589][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:07.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.612][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.615][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.616][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:07.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:07.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.620][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:07.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:07.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:07.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:07.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:07.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.639][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.640][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:07.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.653][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:07.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:07.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.659][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.660][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:07.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:07.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.665][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.666][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:07.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:07.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:07.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:07.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.704][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-07-12 16:02:07.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:07.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.715][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:07.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.733][private$selectFields]
biodb.TRACE[2025-07-12 16:02:07.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:07.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:07.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.744][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.748][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:07.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:07.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.776][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.777][private$selectFields]
biodb.TRACE[2025-07-12 16:02:07.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:07.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:07.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.782][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.786][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.788][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:07.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:07.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.820][private$selectFields]
biodb.TRACE[2025-07-12 16:02:07.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:07.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:07.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.826][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.827][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.830][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:07.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.833][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.834][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:07.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:07.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:07.846][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:07.847][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:07.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:07.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:07.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:07.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:07.972][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:07.974][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:07.977][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:07.977][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:07.980][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:07.983][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:07.985][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:07.986][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:07.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:07.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:07.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:07.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:07.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:07.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:07.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:07.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:07.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.045][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:08.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.063][private$selectFields]
biodb.TRACE[2025-07-12 16:02:08.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:08.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:08.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.068][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.069][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.072][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.075][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.076][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.086][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:08.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.140][private$selectFields]
biodb.TRACE[2025-07-12 16:02:08.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:08.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:08.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.147][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.165][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.167][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.168][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.171][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.172][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:08.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:08.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.204][private$selectFields]
biodb.TRACE[2025-07-12 16:02:08.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:08.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:08.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.215][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.218][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.219][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:08.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:08.231][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:08.232][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:08.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:08.244][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:08.246][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:08.249][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:08.250][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:08.280][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-07-12 16:02:08.281][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.282][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.285][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml.
biodb.DEBUG[2025-07-12 16:02:08.286][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.287][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.288][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.299][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.301][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.306][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.308][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.312][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.332][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.333][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.335][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.336][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.339][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.344][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.348][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.355][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.355][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.357][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.362][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.363][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.401][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-07-12 16:02:08.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:08.419][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-07-12 16:02:08.420][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.421][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.424][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml.
biodb.DEBUG[2025-07-12 16:02:08.425][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.426][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.427][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.438][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.441][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.445][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.447][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.448][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.452][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.460][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.472][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.473][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.476][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.479][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.482][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.483][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.485][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.489][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.495][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.502][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.541][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-07-12 16:02:08.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.551][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:08.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.569][private$selectFields]
biodb.TRACE[2025-07-12 16:02:08.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:08.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:08.571][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.579][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.583][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:08.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.593][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:08.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.610][private$selectFields]
biodb.TRACE[2025-07-12 16:02:08.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:08.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:08.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.625][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.628][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.629][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:08.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:08.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.656][private$selectFields]
biodb.TRACE[2025-07-12 16:02:08.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:08.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:08.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.661][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.664][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.665][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.666][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:08.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.669][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:08.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:08.679][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:08.680][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:08.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:08.692][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:08.694][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:08.697][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:08.698][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:08.713][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-07-12 16:02:08.714][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.716][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.719][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml.
biodb.DEBUG[2025-07-12 16:02:08.720][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.721][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.722][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.733][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.734][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.739][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.741][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.745][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.748][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.764][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.768][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.771][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.772][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.775][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.776][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.778][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.779][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.789][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.796][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.797][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.798][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.799][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.802][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.803][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.839][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-07-12 16:02:08.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:08.857][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-07-12 16:02:08.858][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:08.859][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:08.863][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml.
biodb.DEBUG[2025-07-12 16:02:08.864][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:08.865][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:08.866][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:08.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:08.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:08.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:08.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:08.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:08.879][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.891][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:08.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:08.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.897][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:08.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:08.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:08.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.911][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.912][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:08.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.917][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.918][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:08.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.920][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.921][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.921][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.924][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:08.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:08.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.934][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:08.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.940][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.941][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.943][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:08.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:08.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.946][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.947][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:08.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:08.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:08.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:08.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:08.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.984][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-07-12 16:02:08.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:08.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:08.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:08.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:08.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:08.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:08.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:09.004][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-07-12 16:02:09.005][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:09.006][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:09.011][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml.
biodb.DEBUG[2025-07-12 16:02:09.013][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.014][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:09.016][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:09.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.028][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.031][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.035][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.038][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:09.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.041][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:09.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.048][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:09.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:09.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.055][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:09.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:09.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.062][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.063][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:09.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.072][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.077][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.079][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:09.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:09.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.084][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.086][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:09.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:09.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.092][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:09.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:09.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:09.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:09.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.130][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-07-12 16:02:09.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:09.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.145][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:09.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.163][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.165][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.171][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.175][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.176][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.177][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:09.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.205][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.214][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.218][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.229][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:02:09.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.247][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.255][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.256][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.260][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-12 16:02:09.272][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:09.273][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:09.280][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:09.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:09.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.284][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:09.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:09.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.287][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:09.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:09.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:09.293][biodb::testThat]
biodb.INFO [2025-07-12 16:02:09.294][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-07-12 16:02:09.295][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:02:09.296][biodb::testThat]
biodb.TRACE[2025-07-12 16:02:09.298][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:09.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:09.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.301][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:09.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:09.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.305][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:09.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:09.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:09.419][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:09.421][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:09.423][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:09.424][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:09.457][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:09.459][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:09.461][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:09.462][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.501][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:09.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.518][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.519][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.528][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.531][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.532][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:02:09.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.560][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.569][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.570][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.574][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:09.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.610][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.610][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.611][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.621][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.624][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.625][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.635][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:02:09.636][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:09.637][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:09.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:09.650][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:09.652][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:09.653][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:09.654][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:09.697][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:09.699][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:09.701][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:09.702][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.769][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:09.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.787][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.801][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:09.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.827][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.837][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.840][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.840][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.851][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:09.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.868][private$selectFields]
biodb.TRACE[2025-07-12 16:02:09.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:09.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:09.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.879][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:09.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.883][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:09.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:09.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.895][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:09.896][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:09.896][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:09.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:09.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:09.912][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:09.914][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:09.914][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:09.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:09.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:09.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:09.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:09.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:09.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:09.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:09.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:09.985][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:09.987][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:09.992][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/9e2d7a19ee9cad83d9ec98e38ff7728c.content.
sched.DEBUG[2025-07-12 16:02:09.993][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:09.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:09.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:09.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:10.026][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-07-12 16:02:10.027][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:10.028][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:10.032][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml.
biodb.DEBUG[2025-07-12 16:02:10.033][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.034][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:10.035][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:10.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.047][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.054][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:10.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:10.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.057][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:10.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:10.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.061][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:10.062][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:10.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:10.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:10.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:10.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:10.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:10.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:10.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.078][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.082][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.090][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:10.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.092][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.094][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:10.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.097][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.100][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.105][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:10.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:10.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:10.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:10.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.112][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:10.113][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:10.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:10.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:10.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.119][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:10.120][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:10.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:10.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:10.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.161][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-07-12 16:02:10.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:10.183][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-07-12 16:02:10.184][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:10.185][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:10.189][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml.
biodb.DEBUG[2025-07-12 16:02:10.190][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.191][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:10.192][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:10.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.205][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.213][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:10.213][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:10.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.215][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:10.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:10.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.220][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:10.221][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:10.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:10.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:10.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:10.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:10.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.230][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:10.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:10.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.242][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.243][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.245][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.246][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.250][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:10.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.254][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:10.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.279][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:10.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:10.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:10.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:10.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.289][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:10.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:10.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:10.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:10.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:10.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:10.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:10.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.360][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-07-12 16:02:10.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:10.389][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-07-12 16:02:10.390][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:10.392][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:10.396][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml.
biodb.DEBUG[2025-07-12 16:02:10.397][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.398][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:10.399][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:10.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.413][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.421][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:10.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:10.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.423][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:10.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:10.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.428][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:10.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:10.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:10.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:10.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:10.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:10.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:10.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:10.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:10.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.450][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.451][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:10.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.458][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:10.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.462][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:10.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.473][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:10.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:10.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.476][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:10.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.481][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:10.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:10.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.484][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:10.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:10.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.488][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:10.489][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:10.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:10.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:10.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:10.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:10.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.532][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-07-12 16:02:10.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:10.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.543][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:10.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.563][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.569][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.573][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.574][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.575][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.584][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:10.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.612][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.614][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.618][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.619][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.622][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.626][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-07-12 16:02:10.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.653][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.663][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.664][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.667][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-07-12 16:02:10.679][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:10.680][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:10.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:10.740][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:10.742][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:10.744][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:10.744][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:10.747][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:10.749][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:10.751][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:10.752][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.813][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:10.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.832][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.847][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.851][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:10.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.878][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.883][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.888][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.892][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:10.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.919][private$selectFields]
biodb.TRACE[2025-07-12 16:02:10.920][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:10.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:10.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.927][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.929][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:10.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.933][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:10.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:10.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:10.945][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:10.946][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:10.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:10.958][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:10.960][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:10.963][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/ca8f292aaf9d7e19110a4d4f8e8081db.content.
sched.DEBUG[2025-07-12 16:02:10.964][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:10.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:10.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:10.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:10.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:10.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:10.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:10.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:10.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:10.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:10.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:10.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:10.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:11.015][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-07-12 16:02:11.016][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:11.017][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:11.021][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml.
biodb.DEBUG[2025-07-12 16:02:11.022][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.023][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:11.024][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:11.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.036][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.050][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.053][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.069][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.071][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.075][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.076][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.078][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.079][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.082][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.086][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.092][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.096][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.097][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.109][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.112][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.117][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.118][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.120][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.158][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-07-12 16:02:11.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.168][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:11.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.189][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.190][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.196][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.201][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:11.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.233][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.235][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.244][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.247][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.248][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:11.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.276][private$selectFields]
biodb.TRACE[2025-07-12 16:02:11.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:11.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:11.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.285][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.287][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:11.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.290][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:11.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-07-12 16:02:11.302][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:11.303][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:11.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:11.316][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:11.318][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:11.321][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:11.322][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:11.396][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-07-12 16:02:11.397][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:11.398][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:11.402][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml.
biodb.DEBUG[2025-07-12 16:02:11.403][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.404][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:11.405][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:11.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.416][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.419][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.423][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.449][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.450][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.452][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.453][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.454][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.455][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.456][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.466][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.466][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.472][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.473][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.479][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.480][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.517][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-07-12 16:02:11.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:11.537][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-07-12 16:02:11.537][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:11.539][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:11.542][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml.
biodb.DEBUG[2025-07-12 16:02:11.543][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.544][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:11.545][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:11.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.558][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.564][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.565][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.573][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.579][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.580][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.587][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.591][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.592][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.594][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.595][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.597][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.598][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.615][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.616][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.619][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.622][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.623][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.666][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-07-12 16:02:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:11.685][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-07-12 16:02:11.686][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:11.687][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:11.691][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml.
biodb.DEBUG[2025-07-12 16:02:11.692][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.693][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:11.694][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:11.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.705][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.706][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.711][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.712][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.718][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.720][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.725][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.726][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.737][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.738][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.740][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.744][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.747][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.758][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.758][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.760][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.765][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.765][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.767][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.817][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-07-12 16:02:11.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:11.838][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-07-12 16:02:11.839][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:11.840][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:11.844][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml.
biodb.DEBUG[2025-07-12 16:02:11.845][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.846][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:11.847][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:11.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:11.858][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.865][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.866][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.869][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:11.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:11.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.872][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:11.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:11.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.880][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:11.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:11.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:11.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:11.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.903][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.905][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.906][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.910][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.916][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.924][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.924][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.927][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:11.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:11.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.931][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:11.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:11.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:11.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.970][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-07-12 16:02:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:11.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:11.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:11.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:11.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:11.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:11.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:11.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:11.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:11.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:11.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:11.990][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-07-12 16:02:11.991][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:11.992][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:11.996][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml.
biodb.DEBUG[2025-07-12 16:02:11.996][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:11.998][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:11.999][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:12.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.011][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.018][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:12.019][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:12.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:12.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.025][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:12.026][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:12.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:12.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:12.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:12.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:12.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:12.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:12.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.046][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:12.047][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:12.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.050][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:12.051][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.053][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.054][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:12.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.057][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.060][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.064][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:12.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:12.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:12.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:12.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.071][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:12.072][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:12.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.074][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.075][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:12.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:12.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.079][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:12.080][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:12.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:12.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:12.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.121][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-07-12 16:02:12.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:12.143][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-07-12 16:02:12.144][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:12.145][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:12.149][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml.
biodb.DEBUG[2025-07-12 16:02:12.150][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:12.151][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:12.152][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:12.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.169][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.176][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:12.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:12.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:12.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:12.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.183][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:12.184][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:12.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:12.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:12.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:12.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:12.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.204][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:12.205][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:12.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.208][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:12.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:12.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.222][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:12.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:12.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.224][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:12.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:12.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.229][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:12.230][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:12.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:12.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:12.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.236][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:12.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:12.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:12.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:12.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.278][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-07-12 16:02:12.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:12.298][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-07-12 16:02:12.299][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:12.301][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:12.304][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml.
biodb.DEBUG[2025-07-12 16:02:12.305][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:12.306][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:12.307][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:12.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.320][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.321][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.328][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:12.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:12.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:12.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:12.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.335][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:12.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:12.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.337][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:12.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:12.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:12.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:12.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.344][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.351][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:12.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:12.356][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:12.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.358][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.359][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:12.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.362][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.363][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:12.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.369][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.373][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:12.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:12.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:12.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:12.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.381][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:12.382][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:12.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.384][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:12.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:12.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:12.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:12.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.391][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:12.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:12.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:12.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.434][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-07-12 16:02:12.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:12.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.445][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:12.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.463][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.463][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.470][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.475][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.479][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.491][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:02:12.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.511][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.520][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.521][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.522][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.526][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.539][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-07-12 16:02:12.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.558][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.569][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.573][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.585][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-07-12 16:02:12.586][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:12.587][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:12.595][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:12.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:12.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.599][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:12.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:12.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.603][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:12.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:12.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:12.610][biodb::testThat]
biodb.INFO [2025-07-12 16:02:12.611][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-07-12 16:02:12.612][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:02:12.613][biodb::testThat]
biodb.TRACE[2025-07-12 16:02:12.615][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:12.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:12.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.619][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:12.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:12.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.622][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:12.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:12.680][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:12.683][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:12.684][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:12.685][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:12.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:12.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:12.716][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:12.718][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:12.719][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:12.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.763][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:12.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.782][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.792][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.796][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.806][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:02:12.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.826][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.827][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.827][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.834][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.836][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.840][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.851][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:12.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.868][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.869][private$selectFields]
biodb.TRACE[2025-07-12 16:02:12.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:12.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:12.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.879][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:12.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.883][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:12.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:12.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:02:12.895][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:12.896][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:12.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:12.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:12.911][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:12.913][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:12.914][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:12.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:12.956][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:12.958][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:12.965][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:12.966][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:12.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:12.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:12.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:12.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:12.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:12.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:12.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:12.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:12.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:12.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:12.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:12.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.024][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:13.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.041][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.043][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.056][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.059][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.061][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.065][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:13.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.093][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.095][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.104][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:13.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.136][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.137][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.146][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.151][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:13.161][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:13.162][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:13.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:13.175][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:13.177][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:13.179][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:13.179][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:13.373][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:13.376][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:13.377][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:13.378][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:13.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.451][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:13.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.475][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.485][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.487][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.491][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:13.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.521][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.524][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.529][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.530][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.531][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.538][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.543][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:13.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.576][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.585][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.586][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.590][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:13.601][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:13.602][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:13.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:13.681][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:13.683][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:13.684][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:13.685][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:13.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:13.689][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:13.691][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:13.692][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.759][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:13.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.776][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.777][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.781][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.782][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.786][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.787][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.788][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.789][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.790][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.791][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:13.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.825][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.826][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.826][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.827][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.828][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.831][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.834][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.835][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.839][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:13.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.881][private$selectFields]
biodb.TRACE[2025-07-12 16:02:13.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:13.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:13.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.891][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:13.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.894][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:13.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:13.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:13.906][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:13.907][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:13.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:13.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:13.921][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:13.923][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:13.924][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:13.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:13.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:13.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:13.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:13.989][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:13.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:13.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:13.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:13.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:13.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:13.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.008][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.010][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.018][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.022][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:14.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.053][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.054][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.055][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.056][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.070][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.073][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.074][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:14.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:14.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.109][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.120][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.123][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:14.135][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:14.136][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:14.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:14.149][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:14.151][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:14.154][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:14.154][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.216][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:14.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.235][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.245][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.254][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:14.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.286][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.296][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.300][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:14.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:02:14.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.330][private$selectFields]
biodb.TRACE[2025-07-12 16:02:14.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:14.332][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:14.333][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.341][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:14.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.344][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.345][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.355][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-12 16:02:14.356][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:14.357][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:14.381][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:14.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:14.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.385][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:14.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:14.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:14.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:14.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.394][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.395][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.397][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.397][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.398][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.400][ef$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:14.401][biodb::testThat]
biodb.INFO [2025-07-12 16:02:14.402][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-07-12 16:02:14.403][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:02:14.403][biodb::testThat]
biodb.TRACE[2025-07-12 16:02:14.406][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:14.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:14.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.412][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:14.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:14.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:14.467][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:14.472][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-07-12 16:02:14.473][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:14.487][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-07-12 16:02:14.488][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:14.489][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:14.492][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml.
biodb.DEBUG[2025-07-12 16:02:14.493][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.494][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:14.495][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:14.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.520][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.521][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.529][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.532][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.550][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.551][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.554][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.557][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.559][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.560][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.565][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.570][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.571][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.573][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.577][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.587][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.622][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-07-12 16:02:14.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:14.648][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-07-12 16:02:14.649][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:14.650][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:14.654][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml.
biodb.DEBUG[2025-07-12 16:02:14.655][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.656][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:14.656][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:14.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.668][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.674][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.675][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.681][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.699][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.700][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.706][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.708][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.709][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.715][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.719][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.725][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.726][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.727][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.734][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.770][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-07-12 16:02:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:14.790][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-07-12 16:02:14.791][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:14.792][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:14.796][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml.
biodb.DEBUG[2025-07-12 16:02:14.797][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.798][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:14.798][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:14.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.816][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.819][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.823][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.824][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.826][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.827][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.830][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.851][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:14.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.860][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.863][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:14.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.867][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:14.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.872][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:14.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.879][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:14.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:14.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:14.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:14.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.930][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-07-12 16:02:14.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:14.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:14.950][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-07-12 16:02:14.951][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:14.952][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:14.955][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml.
biodb.DEBUG[2025-07-12 16:02:14.955][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:14.957][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:14.957][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:14.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:14.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:14.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:14.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:14.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:14.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:14.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:14.970][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.970][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.972][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:14.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.976][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.977][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.978][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:14.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:14.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.982][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.983][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.985][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:14.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:14.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.995][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.996][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:14.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:14.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:14.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.002][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.003][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.006][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.009][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.019][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.025][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.026][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.027][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.031][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.032][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.071][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-07-12 16:02:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.086][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:15.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.103][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.103][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.105][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.106][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.108][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.109][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.110][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.113][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.116][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.127][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:15.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.149][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.159][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.162][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.162][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-07-12 16:02:15.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.188][private$selectFields]
biodb.TRACE[2025-07-12 16:02:15.189][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:15.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:15.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.191][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.196][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.197][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:15.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.201][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:15.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.210][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-07-12 16:02:15.211][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:15.211][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:15.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:15.224][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:15.235][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:15.240][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-07-12 16:02:15.247][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:15.264][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-07-12 16:02:15.265][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:15.266][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:15.269][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml.
biodb.DEBUG[2025-07-12 16:02:15.270][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.271][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:15.272][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:15.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.284][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.290][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.294][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.298][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.313][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.318][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.320][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.334][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.341][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.342][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.349][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.387][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-07-12 16:02:15.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:15.408][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-07-12 16:02:15.409][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:15.415][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:15.419][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml.
biodb.DEBUG[2025-07-12 16:02:15.420][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.421][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:15.422][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:15.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.433][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.435][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.439][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.440][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.443][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.446][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.452][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.453][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.459][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.464][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.466][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.469][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.478][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.484][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.485][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.488][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.491][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.492][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.529][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-07-12 16:02:15.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:15.548][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-07-12 16:02:15.549][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:15.550][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:15.554][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml.
biodb.DEBUG[2025-07-12 16:02:15.555][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.556][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:15.557][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:15.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.569][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.571][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.576][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.576][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.578][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.579][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.582][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.585][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.592][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.599][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.604][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.606][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.607][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.610][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.620][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.627][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.627][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.630][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.676][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-07-12 16:02:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:15.694][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-07-12 16:02:15.695][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:15.696][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:15.699][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml.
biodb.DEBUG[2025-07-12 16:02:15.700][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.701][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:15.701][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:15.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.715][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.719][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.719][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.722][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.725][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.727][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.731][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.731][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.737][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.738][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.743][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.745][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.746][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.748][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.749][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.752][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.758][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.765][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.767][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.809][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-07-12 16:02:15.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:15.828][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-07-12 16:02:15.828][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:15.829][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:15.833][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml.
biodb.DEBUG[2025-07-12 16:02:15.834][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:15.835][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:15.836][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:15.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:15.847][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.853][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.856][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:15.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:15.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.859][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:15.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:15.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:15.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:15.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:15.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.879][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.880][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:15.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.886][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:15.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:15.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.923][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:15.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:15.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.930][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.931][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.934][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:15.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.937][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.938][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:15.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:15.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:15.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:15.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:15.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.980][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-07-12 16:02:15.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:15.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:15.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:15.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:15.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:15.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:15.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:15.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:15.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:15.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:15.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.000][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-07-12 16:02:16.001][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.002][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.005][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml.
biodb.DEBUG[2025-07-12 16:02:16.006][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.007][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.008][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.020][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.027][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.028][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.030][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.034][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.036][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.041][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.051][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.059][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.062][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.072][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.075][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.079][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.082][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.083][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.087][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.088][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.090][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.129][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-07-12 16:02:16.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.150][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-07-12 16:02:16.151][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.152][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.156][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml.
biodb.DEBUG[2025-07-12 16:02:16.157][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.158][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.159][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.172][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.174][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.184][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.191][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.210][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.210][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.216][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.220][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.229][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.236][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.237][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.284][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-07-12 16:02:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.295][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:16.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.314][private$selectFields]
biodb.TRACE[2025-07-12 16:02:16.315][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:16.316][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:16.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.320][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.325][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.329][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:16.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-07-12 16:02:16.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.361][private$selectFields]
biodb.TRACE[2025-07-12 16:02:16.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:16.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:16.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.369][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.371][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.372][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.373][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.377][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.377][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:16.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-07-12 16:02:16.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.408][private$selectFields]
biodb.TRACE[2025-07-12 16:02:16.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:16.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:16.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.417][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.419][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:16.420][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.420][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.422][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.423][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:16.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.433][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-07-12 16:02:16.434][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:16.434][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:16.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:16.451][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:16.453][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:16.455][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-07-12 16:02:16.456][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.467][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-07-12 16:02:16.468][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.469][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.472][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml.
biodb.DEBUG[2025-07-12 16:02:16.473][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.474][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.475][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.487][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.493][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.494][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.496][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.500][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.502][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.508][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.520][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.522][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.523][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.527][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.530][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.542][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.550][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.551][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.554][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.599][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-07-12 16:02:16.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.620][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-07-12 16:02:16.620][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.622][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.624][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml.
biodb.DEBUG[2025-07-12 16:02:16.625][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.627][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.638][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.645][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.645][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.647][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.653][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.664][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.664][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.672][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.673][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.674][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.677][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.681][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.687][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.693][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.708][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.742][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-07-12 16:02:16.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:16.753][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:16.755][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:16.759][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-07-12 16:02:16.760][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.771][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-07-12 16:02:16.772][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.773][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.776][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml.
biodb.DEBUG[2025-07-12 16:02:16.777][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.778][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.779][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.790][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.792][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.797][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.798][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.804][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.814][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.820][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.826][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.827][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.833][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.834][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.836][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.842][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.846][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.852][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.853][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:16.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.859][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.860][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:16.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:16.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:16.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.900][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-07-12 16:02:16.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:16.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:16.919][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-07-12 16:02:16.920][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:16.921][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:16.926][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml.
biodb.DEBUG[2025-07-12 16:02:16.927][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:16.928][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:16.929][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:16.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:16.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:16.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:16.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:16.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:16.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:16.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:16.941][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:16.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.947][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.950][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:16.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.954][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.961][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:16.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:16.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.968][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:16.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:16.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.973][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.975][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:16.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.979][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.980][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:16.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.985][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.986][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.988][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:16.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:16.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.991][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.993][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:16.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:16.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:16.998][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:16.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:16.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.001][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.005][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.006][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.007][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.051][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-07-12 16:02:17.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:17.071][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-07-12 16:02:17.072][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:17.074][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:17.076][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml.
biodb.DEBUG[2025-07-12 16:02:17.077][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.078][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:17.079][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:17.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.092][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.096][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:17.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.108][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.116][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.117][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:17.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:17.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.123][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.125][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:17.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.133][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.134][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.135][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.142][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:17.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.146][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.149][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.156][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:17.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:17.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.163][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:17.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:17.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.200][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-07-12 16:02:17.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.215][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:17.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.231][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.232][private$selectFields]
biodb.TRACE[2025-07-12 16:02:17.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:17.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:17.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.241][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.245][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:17.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-07-12 16:02:17.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.271][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.271][private$selectFields]
biodb.TRACE[2025-07-12 16:02:17.272][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:17.273][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:17.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.276][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.281][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.284][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:17.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.294][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-07-12 16:02:17.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.311][private$selectFields]
biodb.TRACE[2025-07-12 16:02:17.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:17.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:17.313][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.314][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.321][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.324][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:17.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-07-12 16:02:17.335][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:17.336][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:17.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:17.364][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:17.366][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:17.368][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:17.368][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:17.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:17.390][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:17.392][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:17.393][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:17.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.449][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.449][private$selectFields]
biodb.TRACE[2025-07-12 16:02:17.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:17.456][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:17.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.465][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.469][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:17.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:02:17.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.496][private$selectFields]
biodb.TRACE[2025-07-12 16:02:17.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:17.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:17.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.502][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.507][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.511][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:17.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.539][private$selectFields]
biodb.TRACE[2025-07-12 16:02:17.539][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:17.540][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:17.541][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.548][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.550][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.554][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.567][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:02:17.568][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:17.568][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:17.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:17.581][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:17.583][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:17.585][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:17.586][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:17.627][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:17.629][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:17.631][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:17.631][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.688][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:17.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.710][private$selectFields]
biodb.TRACE[2025-07-12 16:02:17.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:17.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:17.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.715][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.718][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.720][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.723][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.724][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:17.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.733][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:17.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.749][private$selectFields]
biodb.TRACE[2025-07-12 16:02:17.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:17.751][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:17.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.757][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.758][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.758][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.761][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.762][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:17.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.771][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:17.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.788][private$selectFields]
biodb.TRACE[2025-07-12 16:02:17.789][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:17.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:17.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.793][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.796][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:17.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.801][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:17.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:17.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:17.812][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:17.812][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:17.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:17.824][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:17.827][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:17.828][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:17.829][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:17.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:17.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:17.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:17.984][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:17.986][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:17.987][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:17.988][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:17.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:17.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:17.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:17.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:17.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:17.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:17.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.044][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:18.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.059][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.060][private$selectFields]
biodb.TRACE[2025-07-12 16:02:18.061][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:18.062][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:18.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.063][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.064][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.066][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.066][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.067][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.068][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.070][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.071][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.073][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.073][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:18.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:18.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.099][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.100][private$selectFields]
biodb.TRACE[2025-07-12 16:02:18.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:18.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:18.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.103][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.106][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.108][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.109][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.111][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.115][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:18.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:18.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.142][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.143][private$selectFields]
biodb.TRACE[2025-07-12 16:02:18.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:18.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:18.145][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.150][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.152][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.155][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.156][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:18.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.165][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:18.166][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:18.167][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:18.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:18.203][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:18.205][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:18.208][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-07-12 16:02:18.209][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:18.255][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-07-12 16:02:18.255][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:18.256][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:18.265][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml.
biodb.DEBUG[2025-07-12 16:02:18.266][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.266][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:18.267][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:18.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.278][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.284][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.285][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.287][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.291][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.291][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.306][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.310][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.310][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.313][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.316][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.317][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.318][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.319][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.329][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.336][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.343][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.344][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.346][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.380][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-07-12 16:02:18.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:18.419][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-07-12 16:02:18.419][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:18.421][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:18.423][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml.
biodb.DEBUG[2025-07-12 16:02:18.424][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.425][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:18.426][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:18.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.437][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.440][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.450][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.452][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.456][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.459][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.470][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.476][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.477][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.479][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.480][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.482][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.491][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.497][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.498][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.499][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.500][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.538][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-07-12 16:02:18.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:18.557][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-07-12 16:02:18.557][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:18.559][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:18.564][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml.
biodb.DEBUG[2025-07-12 16:02:18.564][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.566][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:18.567][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:18.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.578][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.579][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.580][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.584][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.585][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.587][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:18.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.591][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:18.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:18.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:18.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.600][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.601][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:18.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.605][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:18.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.606][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.607][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.608][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.610][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.610][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:18.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:18.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.620][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:18.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.627][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.628][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.631][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:18.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.634][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.635][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:18.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:18.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:18.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:18.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.672][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-07-12 16:02:18.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.688][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:18.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.706][private$selectFields]
biodb.TRACE[2025-07-12 16:02:18.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:18.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:18.708][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.711][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.715][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.716][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.720][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.721][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:18.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.749][private$selectFields]
biodb.TRACE[2025-07-12 16:02:18.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:18.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:18.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.752][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.753][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.757][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.758][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.759][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.762][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.763][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-07-12 16:02:18.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.792][private$selectFields]
biodb.TRACE[2025-07-12 16:02:18.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:18.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:18.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.798][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.801][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.802][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.805][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.806][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:18.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.816][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-07-12 16:02:18.817][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:18.818][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:18.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:18.830][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:18.832][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:18.837][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-07-12 16:02:18.838][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:18.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:18.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:18.898][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:18.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.916][private$selectFields]
biodb.TRACE[2025-07-12 16:02:18.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:18.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:18.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.931][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:18.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:18.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:18.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.966][private$selectFields]
biodb.TRACE[2025-07-12 16:02:18.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:18.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:18.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.971][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.976][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:18.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.979][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.980][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:18.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:18.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:18.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:18.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:18.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:18.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:18.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:18.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:18.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.007][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:19.008][private$selectFields]
biodb.TRACE[2025-07-12 16:02:19.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:19.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:19.010][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:19.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:19.019][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:19.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.022][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:19.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:19.034][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:19.035][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:19.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:19.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:19.049][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:19.051][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-07-12 16:02:19.052][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.083][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-07-12 16:02:19.084][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.085][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.088][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml.
biodb.DEBUG[2025-07-12 16:02:19.089][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.089][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.090][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.101][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.108][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.109][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.111][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.115][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.115][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.123][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.134][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.135][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.136][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.137][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.140][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.141][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.146][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.150][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.153][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.160][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.164][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.166][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.205][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-07-12 16:02:19.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.223][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-07-12 16:02:19.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.225][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.228][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml.
biodb.DEBUG[2025-07-12 16:02:19.228][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.229][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.241][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.248][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.249][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.250][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.251][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.254][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.263][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.270][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.276][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.277][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.280][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.292][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.296][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.297][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.299][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.339][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-07-12 16:02:19.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.359][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-07-12 16:02:19.360][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.362][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.365][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml.
biodb.DEBUG[2025-07-12 16:02:19.366][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.367][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.368][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.379][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.380][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.386][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.387][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.393][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.406][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.407][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.408][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.412][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.413][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.415][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.417][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.418][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.427][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.428][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.429][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.434][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.436][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.440][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.441][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.442][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.446][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.447][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.482][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-07-12 16:02:19.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.519][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-07-12 16:02:19.520][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.521][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.524][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml.
biodb.DEBUG[2025-07-12 16:02:19.525][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.526][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.527][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.538][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.545][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.546][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.547][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.551][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.572][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.578][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.579][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.580][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.581][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.591][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.597][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.599][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.604][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.604][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.606][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.640][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-07-12 16:02:19.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.665][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-07-12 16:02:19.666][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.667][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.670][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml.
biodb.DEBUG[2025-07-12 16:02:19.671][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.672][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.673][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.685][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.692][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.692][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.694][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.698][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.706][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.717][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.717][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.720][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.724][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.725][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.726][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.727][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.731][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.737][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.740][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.744][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.745][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.747][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.751][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.752][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.754][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.791][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-07-12 16:02:19.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.811][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-07-12 16:02:19.811][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.813][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.816][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml.
biodb.DEBUG[2025-07-12 16:02:19.816][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.817][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.818][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.830][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.836][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.837][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.840][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.843][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.845][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.852][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:19.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.864][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:19.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.865][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.866][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.870][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:19.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.873][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.873][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:19.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.879][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:19.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:19.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.886][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.887][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:19.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.892][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.893][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:19.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:19.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.937][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-07-12 16:02:19.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:19.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:19.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:19.956][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-07-12 16:02:19.957][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:19.958][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:19.961][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml.
biodb.DEBUG[2025-07-12 16:02:19.962][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:19.963][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:19.964][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:19.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:19.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:19.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:19.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:19.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:19.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:19.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:19.975][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:19.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:19.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.981][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.981][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.983][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:19.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.987][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.989][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:19.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:19.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:19.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:19.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.010][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.011][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.017][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.020][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.024][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.025][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.026][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.031][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.032][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.039][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.076][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-07-12 16:02:20.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.095][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-07-12 16:02:20.096][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.097][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.100][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml.
biodb.DEBUG[2025-07-12 16:02:20.101][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.102][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.103][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.115][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.122][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.128][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.131][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.135][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.136][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.138][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.142][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.143][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.145][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.158][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.159][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.161][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.162][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.172][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.174][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.179][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.181][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.223][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-07-12 16:02:20.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.243][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-07-12 16:02:20.244][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.245][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.248][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml.
biodb.DEBUG[2025-07-12 16:02:20.249][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.250][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.251][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.263][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.270][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.271][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.274][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.277][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.278][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.284][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.284][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.291][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.297][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.298][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.301][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.304][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.308][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.314][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.321][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.321][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.330][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.365][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-07-12 16:02:20.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.385][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-07-12 16:02:20.385][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.387][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.390][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml.
biodb.DEBUG[2025-07-12 16:02:20.391][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.392][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.393][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.410][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.417][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.419][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.423][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.429][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.430][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.446][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.449][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.452][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.453][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.455][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.459][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.466][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.467][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.469][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.473][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.473][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.511][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-07-12 16:02:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.531][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-07-12 16:02:20.531][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.533][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.535][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml.
biodb.DEBUG[2025-07-12 16:02:20.536][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.537][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.538][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.550][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.557][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.557][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.559][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.563][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.564][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.571][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.584][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.585][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.586][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.607][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.607][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.613][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.614][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.615][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.658][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-07-12 16:02:20.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.789][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-07-12 16:02:20.790][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.791][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.794][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml.
biodb.DEBUG[2025-07-12 16:02:20.795][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.796][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.797][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.809][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.809][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.816][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.816][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.818][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.822][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.826][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.829][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.830][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:20.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:20.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:20.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:20.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.845][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.846][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.849][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:20.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:20.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:20.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:20.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:20.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:20.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.879][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.880][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:20.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:20.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:20.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.925][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-07-12 16:02:20.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:20.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:20.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:20.962][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-07-12 16:02:20.963][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:20.964][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:20.967][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml.
biodb.DEBUG[2025-07-12 16:02:20.968][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:20.969][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:20.970][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:20.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:20.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:20.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:20.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:20.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:20.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:20.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:20.982][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:20.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:20.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.988][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.989][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:20.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:20.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.995][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:20.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:20.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:20.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.002][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.017][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.020][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.023][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.033][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.039][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.040][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.047][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.048][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.084][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-07-12 16:02:21.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:21.103][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-07-12 16:02:21.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:21.105][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:21.108][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml.
biodb.DEBUG[2025-07-12 16:02:21.109][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:21.110][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:21.111][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:21.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.123][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.125][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.130][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.131][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.133][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.139][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.170][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.171][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.173][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.184][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.190][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.191][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.193][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.233][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-07-12 16:02:21.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:21.253][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-07-12 16:02:21.254][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:21.255][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:21.258][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml.
biodb.DEBUG[2025-07-12 16:02:21.258][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:21.260][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:21.260][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:21.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.278][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.285][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.287][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.291][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.292][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.294][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.300][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.306][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.307][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.311][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.314][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.320][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.327][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.328][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.329][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.334][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.335][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.336][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.372][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-07-12 16:02:21.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:21.397][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-07-12 16:02:21.398][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:21.399][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:21.402][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml.
biodb.DEBUG[2025-07-12 16:02:21.403][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:21.404][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:21.405][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:21.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.417][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.419][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.423][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.442][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.443][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.444][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.449][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.449][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.452][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.453][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.455][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.458][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.459][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.465][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.471][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.472][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.477][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.478][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.515][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-07-12 16:02:21.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:21.535][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-07-12 16:02:21.535][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:21.536][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:21.539][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml.
biodb.DEBUG[2025-07-12 16:02:21.540][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:21.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:21.542][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:21.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.553][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.559][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.560][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.565][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.575][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.586][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.586][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.589][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.590][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.596][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.602][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.603][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.608][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.609][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.615][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.616][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.617][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.664][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-07-12 16:02:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:21.683][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-07-12 16:02:21.684][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:21.685][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:21.687][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml.
biodb.DEBUG[2025-07-12 16:02:21.688][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:21.689][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:21.690][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:21.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.701][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.704][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.708][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.709][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.710][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:21.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:21.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.721][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.723][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:21.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:21.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.733][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.734][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:21.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.736][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.737][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:21.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.745][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:21.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.750][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.750][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.752][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.756][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:21.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:21.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.763][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.765][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:21.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.800][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-07-12 16:02:21.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:21.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:21.830][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:21.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.847][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.852][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.857][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.861][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:21.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.893][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.894][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.895][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.900][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.903][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.905][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.906][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.916][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:21.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:21.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.933][private$selectFields]
biodb.TRACE[2025-07-12 16:02:21.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:21.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:21.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.939][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.940][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.943][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:21.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:21.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:21.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:21.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:21.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:21.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:21.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:21.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:21.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:21.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:21.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:21.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:21.987][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:21.989][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:21.993][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-07-12 16:02:21.994][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:21.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:21.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:21.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.070][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:22.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.088][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.090][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.092][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.094][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.095][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.097][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.098][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.101][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.102][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.112][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:22.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.135][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.135][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.137][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.140][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.143][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.145][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.148][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-07-12 16:02:22.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.175][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.176][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.177][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.183][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.185][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.188][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.188][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.199][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-07-12 16:02:22.199][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:22.200][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:22.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:22.212][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.214][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.218][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-07-12 16:02:22.218][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:22.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.374][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.385][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.385][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.386][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.389][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.399][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-07-12 16:02:22.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.415][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.416][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.419][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.421][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.426][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.429][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-07-12 16:02:22.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.456][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.459][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.462][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.466][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.470][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-07-12 16:02:22.481][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:22.481][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:22.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:22.493][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.495][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.497][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-07-12 16:02:22.497][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:22.536][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.538][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.540][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-07-12 16:02:22.541][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.598][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:22.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.621][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.622][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.627][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.631][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.631][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.634][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.635][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.644][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-07-12 16:02:22.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.661][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.663][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.674][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-07-12 16:02:22.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.701][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.702][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.703][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.708][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.711][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.712][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.715][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-07-12 16:02:22.726][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:22.727][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:22.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:22.756][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.758][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.759][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:22.760][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.777][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:22.781][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.783][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.785][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:22.785][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:22.824][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:22.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.841][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.842][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.842][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.856][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.860][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-07-12 16:02:22.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.888][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.888][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.889][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.893][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.897][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.901][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.912][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:22.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:22.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.935][private$selectFields]
biodb.TRACE[2025-07-12 16:02:22.936][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:22.937][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:22.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.950][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.951][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:22.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.955][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:22.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:22.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:22.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:22.967][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-07-12 16:02:22.967][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:22.968][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:22.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:22.981][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:22.984][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:22.986][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:22.987][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:22.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:22.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:22.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:22.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:22.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:22.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:22.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:23.029][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:23.031][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:23.034][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:23.035][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:23.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.092][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:23.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.108][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.119][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.123][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.124][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.127][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.127][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:23.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.154][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.155][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.163][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.165][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.179][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:23.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.197][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.198][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.199][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.207][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.211][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:23.222][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:23.223][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:23.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:23.235][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:23.237][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:23.239][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:23.240][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:23.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:23.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:23.396][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:23.398][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:23.399][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:23.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.453][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:23.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.470][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.471][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.480][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.483][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:23.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.509][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.510][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.518][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.522][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.532][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:23.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.549][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.549][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.558][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.559][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.560][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.562][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:23.573][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:23.573][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:23.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:23.609][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:23.611][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:23.614][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-07-12 16:02:23.615][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:23.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.767][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:23.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.787][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.788][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.788][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.795][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.800][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.801][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.802][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.803][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.805][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:23.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.843][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.845][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.845][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.856][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.857][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.862][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-07-12 16:02:23.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.894][private$selectFields]
biodb.TRACE[2025-07-12 16:02:23.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:23.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:23.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.899][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.902][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.903][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.903][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:23.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.913][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:23.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:23.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-07-12 16:02:23.925][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:23.926][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:23.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:23.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:23.940][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:23.943][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-07-12 16:02:23.944][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:23.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:23.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:23.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:23.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:23.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:23.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:23.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:23.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:23.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:23.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:23.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.004][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:24.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.023][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.037][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:24.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.066][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.072][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.073][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.075][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.076][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.080][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.092][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:24.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.109][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.118][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.120][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.123][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.124][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.136][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-07-12 16:02:24.137][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:24.138][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:24.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:24.150][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:24.152][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:24.155][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-07-12 16:02:24.156][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:24.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:24.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.706][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:24.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.723][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.723][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.725][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.731][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.731][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.732][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.735][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.736][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:24.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.762][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.767][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.772][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.775][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.776][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.786][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-07-12 16:02:24.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.803][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.803][private$selectFields]
biodb.TRACE[2025-07-12 16:02:24.804][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:24.805][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:24.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.808][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.809][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.812][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.812][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:24.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.815][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.816][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:24.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:24.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-07-12 16:02:24.826][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:24.827][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:24.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:24.896][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:24.898][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:24.902][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-12 16:02:24.903][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:24.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:24.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:24.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:24.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:24.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:24.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:24.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:24.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:24.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:24.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:24.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:24.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:25.013][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-07-12 16:02:25.014][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:25.015][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:25.019][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml.
biodb.DEBUG[2025-07-12 16:02:25.020][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:25.021][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:25.022][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:25.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.033][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.036][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.040][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.041][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.042][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.046][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.048][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.054][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.064][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.065][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.068][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.070][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.071][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.073][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.077][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.079][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.083][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.084][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.089][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.090][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.092][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.093][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.096][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.097][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.132][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-07-12 16:02:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:25.158][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-07-12 16:02:25.159][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:25.160][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:25.163][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml.
biodb.DEBUG[2025-07-12 16:02:25.164][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:25.165][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:25.166][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:25.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.177][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.182][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.185][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.186][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.188][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.191][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.195][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.196][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.211][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.214][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.217][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.232][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.233][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.235][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.238][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.239][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.274][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-07-12 16:02:25.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.283][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:25.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.299][private$selectFields]
biodb.TRACE[2025-07-12 16:02:25.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:25.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:25.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.308][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.308][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.309][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.311][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.312][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:25.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:25.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.337][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.338][private$selectFields]
biodb.TRACE[2025-07-12 16:02:25.339][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:25.340][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:25.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.343][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.346][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.347][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.351][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:25.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.384][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.384][private$selectFields]
biodb.TRACE[2025-07-12 16:02:25.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:25.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:25.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.393][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.396][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.396][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.397][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.400][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.401][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:25.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-07-12 16:02:25.411][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:25.411][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:25.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:25.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:25.425][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:25.430][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-07-12 16:02:25.431][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:25.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:25.444][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-07-12 16:02:25.445][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:25.446][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:25.449][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml.
biodb.DEBUG[2025-07-12 16:02:25.450][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:25.451][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:25.452][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:25.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.462][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.463][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.469][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.469][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.472][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.475][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.477][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.493][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.494][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.499][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.500][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.502][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.511][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.513][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.517][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.518][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.523][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.524][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.558][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-07-12 16:02:25.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:25.596][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-07-12 16:02:25.597][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:25.598][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:25.602][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml.
biodb.DEBUG[2025-07-12 16:02:25.603][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:25.603][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:25.604][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:25.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.623][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.629][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.630][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.632][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.632][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.635][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.647][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.648][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.653][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.654][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.659][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.661][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.662][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.665][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.670][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.672][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.676][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.678][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.679][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.719][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-07-12 16:02:25.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:25.747][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:25.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.764][private$selectFields]
biodb.TRACE[2025-07-12 16:02:25.765][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:25.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:25.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.769][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.772][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.773][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.774][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.777][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:25.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-07-12 16:02:25.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.804][private$selectFields]
biodb.TRACE[2025-07-12 16:02:25.805][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:25.806][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:25.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.814][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.818][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.828][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:25.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.850][private$selectFields]
biodb.TRACE[2025-07-12 16:02:25.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:25.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:25.853][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.856][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.860][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:25.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.863][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.864][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:25.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:25.874][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:25.875][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:25.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:25.886][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:25.888][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:25.890][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-07-12 16:02:25.891][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:25.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:25.902][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-07-12 16:02:25.902][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:25.903][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:25.907][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml.
biodb.DEBUG[2025-07-12 16:02:25.907][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:25.908][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:25.909][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:25.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:25.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:25.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:25.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:25.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:25.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:25.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:25.920][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.926][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.929][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:25.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:25.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.932][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:25.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.950][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:25.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.953][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.954][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.957][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:25.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:25.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.966][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.968][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:25.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.972][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.972][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:25.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:25.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.978][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.979][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:25.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:25.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.013][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-07-12 16:02:26.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:26.032][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-07-12 16:02:26.033][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:26.034][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:26.036][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml.
biodb.DEBUG[2025-07-12 16:02:26.037][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:26.038][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:26.039][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:26.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.050][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.056][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.057][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.062][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.083][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.087][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.088][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.089][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.090][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:26.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.092][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:26.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.098][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.102][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.108][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:26.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:26.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.115][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.150][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-07-12 16:02:26.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:26.169][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-07-12 16:02:26.170][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:26.171][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:26.174][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml.
biodb.DEBUG[2025-07-12 16:02:26.175][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:26.176][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:26.177][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:26.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.191][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.195][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.201][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.202][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.208][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.214][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.220][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.221][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.223][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:26.224][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.226][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:26.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.241][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:26.242][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.244][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:26.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.247][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.248][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.286][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-07-12 16:02:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:26.330][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-07-12 16:02:26.331][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:26.332][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:26.335][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml.
biodb.DEBUG[2025-07-12 16:02:26.336][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:26.337][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:26.338][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:26.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.349][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.351][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.355][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.356][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.357][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:26.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:26.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.362][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.363][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.364][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:26.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.370][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:26.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:26.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.379][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.380][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.382][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:26.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.386][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:26.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.399][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:26.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.408][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:26.409][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.411][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:26.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:26.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.415][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.416][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:26.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:26.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:26.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:26.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.456][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-07-12 16:02:26.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.489][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:26.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.507][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.515][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.516][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.520][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:26.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-07-12 16:02:26.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.548][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.549][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.556][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.558][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.567][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:26.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.578][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-07-12 16:02:26.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.595][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.600][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.603][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.604][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.608][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:26.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.618][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-07-12 16:02:26.618][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:26.619][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:26.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:26.650][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:26.652][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:26.653][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:26.654][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:26.656][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:26.658][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:26.660][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:26.661][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:26.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.717][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:26.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.734][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.736][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.737][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.741][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.742][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.743][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.744][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.745][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.747][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:26.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:26.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.772][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.773][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.784][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.794][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:26.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.817][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.818][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.825][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.830][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.830][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:26.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:26.841][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:26.842][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:26.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:26.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:26.855][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:26.857][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:26.858][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:26.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:26.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:26.915][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:26.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.932][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:26.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:26.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:26.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:26.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:26.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:26.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:26.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.973][private$selectFields]
biodb.TRACE[2025-07-12 16:02:26.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:26.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:26.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.979][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.983][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:26.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.984][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.986][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.986][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:26.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:26.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:26.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:26.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:26.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:26.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.012][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.012][private$selectFields]
biodb.TRACE[2025-07-12 16:02:27.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:27.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:27.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.018][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.023][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.026][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.027][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:27.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:27.045][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:27.046][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:27.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:27.058][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:27.060][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:27.063][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:27.064][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:27.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.121][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:27.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.139][private$selectFields]
biodb.TRACE[2025-07-12 16:02:27.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:27.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:27.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.144][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.147][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.149][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.153][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:27.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.163][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:27.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.181][private$selectFields]
biodb.TRACE[2025-07-12 16:02:27.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:27.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:27.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.184][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.191][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.192][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.195][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:27.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:02:27.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.222][private$selectFields]
biodb.TRACE[2025-07-12 16:02:27.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:27.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:27.224][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.232][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:27.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.236][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.236][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:27.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-12 16:02:27.247][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:27.247][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:27.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:27.277][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:27.279][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:27.283][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-07-12 16:02:27.284][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:27.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:27.339][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-07-12 16:02:27.340][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:27.341][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:27.345][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml.
biodb.DEBUG[2025-07-12 16:02:27.345][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:27.346][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:27.347][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:27.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.361][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.365][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.366][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.371][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.374][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.384][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.385][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.390][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.391][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.392][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.393][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.397][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.397][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.400][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.406][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.409][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.416][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.417][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.422][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.423][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.457][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-07-12 16:02:27.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:27.475][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-07-12 16:02:27.476][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:27.477][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:27.480][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml.
biodb.DEBUG[2025-07-12 16:02:27.481][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:27.482][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:27.483][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:27.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.494][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.501][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.503][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.507][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.509][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.520][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.533][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.534][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.536][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.540][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.541][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.543][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.553][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.559][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.562][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.600][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-07-12 16:02:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:27.619][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-07-12 16:02:27.620][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:27.621][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:27.625][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml.
biodb.DEBUG[2025-07-12 16:02:27.626][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:27.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:27.627][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:27.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.639][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.646][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.652][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.655][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.661][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.665][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.666][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.667][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.675][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.678][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.691][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.697][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.698][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.704][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.706][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.741][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-07-12 16:02:27.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:27.767][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-07-12 16:02:27.768][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:27.769][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:27.772][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml.
biodb.DEBUG[2025-07-12 16:02:27.773][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:27.774][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:27.775][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:27.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.786][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.786][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.792][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.793][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.794][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.795][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.798][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.800][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.804][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.805][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.806][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.810][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.812][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.815][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.816][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.821][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.823][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.833][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.839][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.847][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.883][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-07-12 16:02:27.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:27.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:27.902][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-07-12 16:02:27.903][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:27.904][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:27.907][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml.
biodb.DEBUG[2025-07-12 16:02:27.907][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:27.908][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:27.909][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:27.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:27.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:27.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:27.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:27.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:27.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:27.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:27.920][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:27.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:27.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.928][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.930][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:27.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:27.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.934][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:27.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:27.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.940][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.941][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:27.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:27.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.953][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.954][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:27.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.956][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:27.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.962][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.963][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:27.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.969][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.970][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.971][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:27.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:27.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.976][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.977][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.978][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.979][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:27.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:27.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.983][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:27.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:27.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:27.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:27.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:27.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.027][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-07-12 16:02:28.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.055][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:28.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.072][private$selectFields]
biodb.TRACE[2025-07-12 16:02:28.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:28.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:28.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.077][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.080][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.082][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.085][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:28.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:28.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.108][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.112][private$selectFields]
biodb.TRACE[2025-07-12 16:02:28.113][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:28.113][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:28.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.120][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.121][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.122][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.125][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.126][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:28.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.136][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:28.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.146][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.154][private$selectFields]
biodb.TRACE[2025-07-12 16:02:28.154][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:28.155][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:28.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.162][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.163][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:28.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.167][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:28.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:28.179][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:28.180][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:28.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:28.192][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:28.194][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:28.199][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-07-12 16:02:28.200][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:28.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:28.258][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-07-12 16:02:28.259][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:28.260][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:28.263][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml.
biodb.DEBUG[2025-07-12 16:02:28.264][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:28.265][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:28.266][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:28.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.277][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.283][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.284][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.285][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.289][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.307][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.308][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.310][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.324][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.326][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.331][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.332][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.333][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.337][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.340][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.374][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-07-12 16:02:28.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:28.392][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-07-12 16:02:28.393][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:28.394][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:28.398][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml.
biodb.DEBUG[2025-07-12 16:02:28.399][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:28.400][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:28.401][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:28.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.412][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.418][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.419][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.424][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.426][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.427][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.432][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.438][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.443][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.446][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.449][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.452][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.453][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.455][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.459][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.466][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.466][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.514][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-07-12 16:02:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:28.532][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-07-12 16:02:28.533][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:28.534][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:28.537][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml.
biodb.DEBUG[2025-07-12 16:02:28.538][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:28.539][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:28.540][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:28.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.551][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.557][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.558][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.559][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.563][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.564][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.565][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.583][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.584][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.587][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.588][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.590][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.596][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.602][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.603][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.607][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.608][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.610][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.613][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.614][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.650][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-07-12 16:02:28.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:28.669][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-07-12 16:02:28.670][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:28.671][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:28.674][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml.
biodb.DEBUG[2025-07-12 16:02:28.675][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:28.676][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:28.677][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:28.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.688][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.690][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.694][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.697][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.700][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.701][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.715][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.722][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.726][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.727][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.729][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.732][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.738][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.742][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.743][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.744][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.749][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.750][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.751][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.755][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.756][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.758][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.793][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-07-12 16:02:28.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:28.812][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-07-12 16:02:28.813][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:28.814][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:28.818][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml.
biodb.DEBUG[2025-07-12 16:02:28.819][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:28.820][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:28.821][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:28.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.833][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.839][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.840][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.842][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.845][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.846][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:28.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.865][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.866][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:28.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.868][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.880][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:28.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.887][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.894][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:28.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:28.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.932][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-07-12 16:02:28.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:28.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:28.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:28.958][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-07-12 16:02:28.958][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:28.959][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:28.962][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml.
biodb.DEBUG[2025-07-12 16:02:28.963][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:28.964][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:28.965][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:28.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:28.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:28.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:28.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:28.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:28.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:28.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:28.976][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.978][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.982][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.983][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:28.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:28.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.988][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:28.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:28.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:28.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:28.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:28.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.006][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.006][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.009][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.011][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.012][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.021][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.027][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.033][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.034][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.036][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.069][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-07-12 16:02:29.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:29.088][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-07-12 16:02:29.089][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:29.090][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:29.092][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml.
biodb.DEBUG[2025-07-12 16:02:29.093][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:29.094][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:29.095][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:29.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.106][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.108][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.112][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.112][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.118][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.118][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.120][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.124][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.132][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.136][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.138][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.139][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.142][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.145][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.146][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.147][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.151][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.158][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.163][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.164][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.205][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-07-12 16:02:29.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:29.223][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-07-12 16:02:29.224][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:29.225][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:29.227][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml.
biodb.DEBUG[2025-07-12 16:02:29.228][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:29.229][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:29.230][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:29.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.241][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.242][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.247][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.250][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.253][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.255][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.262][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.268][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.275][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.288][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.294][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.295][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.297][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.302][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.336][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-07-12 16:02:29.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:29.356][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-07-12 16:02:29.356][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:29.358][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:29.360][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml.
biodb.DEBUG[2025-07-12 16:02:29.361][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:29.362][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:29.363][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:29.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.374][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.376][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.380][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.387][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.388][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.393][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.402][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.405][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.406][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.407][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.408][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.409][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.413][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.416][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.417][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.422][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.424][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.430][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.434][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.435][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.437][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.472][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-07-12 16:02:29.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:29.492][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-07-12 16:02:29.493][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:29.494][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:29.497][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml.
biodb.DEBUG[2025-07-12 16:02:29.498][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:29.499][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:29.500][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:29.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.518][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.525][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.528][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.534][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.535][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.536][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.539][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.540][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.540][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.543][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.544][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.546][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.556][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.559][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.563][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.564][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.570][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.608][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-07-12 16:02:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:29.628][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-07-12 16:02:29.629][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:29.630][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:29.633][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml.
biodb.DEBUG[2025-07-12 16:02:29.634][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:29.635][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:29.642][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:29.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.657][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.661][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.662][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.664][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.668][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.669][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.674][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.675][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.681][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.687][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.687][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.690][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.692][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.705][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.710][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.712][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.718][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.755][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-07-12 16:02:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:29.775][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-07-12 16:02:29.775][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:29.777][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:29.780][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml.
biodb.DEBUG[2025-07-12 16:02:29.781][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:29.782][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:29.783][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:29.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.794][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.797][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.801][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.805][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.808][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.810][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.815][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.816][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.822][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.826][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.827][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.829][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.830][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.836][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.842][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.844][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.848][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.854][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.855][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.856][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.897][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-07-12 16:02:29.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:29.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:29.915][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-07-12 16:02:29.916][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:29.917][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:29.920][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml.
biodb.DEBUG[2025-07-12 16:02:29.921][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:29.922][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:29.922][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:29.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:29.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:29.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:29.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:29.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:29.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:29.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:29.934][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:29.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.941][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.941][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.944][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:29.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:29.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.947][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:29.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:29.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.954][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.954][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:29.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:29.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.966][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.967][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:29.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.968][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.969][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.971][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:29.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:29.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.978][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:29.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.982][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:29.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:29.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.988][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:29.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.995][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:29.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.029][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-07-12 16:02:30.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:30.048][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-07-12 16:02:30.049][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:30.050][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:30.053][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml.
biodb.DEBUG[2025-07-12 16:02:30.054][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:30.055][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:30.056][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:30.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:30.067][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.069][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.073][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.074][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.075][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.079][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.085][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.087][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.098][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.106][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.108][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.113][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.115][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.119][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.126][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.128][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.132][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.133][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.134][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.169][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-07-12 16:02:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:30.188][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-07-12 16:02:30.189][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:30.190][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:30.193][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml.
biodb.DEBUG[2025-07-12 16:02:30.194][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:30.195][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:30.196][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:30.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:30.207][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.213][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.214][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.220][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.221][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.227][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.229][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.233][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.234][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.239][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.239][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.242][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.248][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.250][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.254][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.262][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.266][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.267][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.268][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.305][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-07-12 16:02:30.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:30.325][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-07-12 16:02:30.326][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:30.327][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:30.330][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml.
biodb.DEBUG[2025-07-12 16:02:30.331][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:30.332][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:30.333][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:30.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:30.352][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.358][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.359][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.360][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.364][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.365][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.373][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.379][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.383][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.384][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.385][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.386][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.388][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.393][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.395][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.399][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.405][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.408][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.412][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.413][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.414][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.450][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-07-12 16:02:30.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:30.469][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-07-12 16:02:30.469][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:30.470][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:30.473][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml.
biodb.DEBUG[2025-07-12 16:02:30.474][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:30.475][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:30.476][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:30.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:30.487][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.488][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.493][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.494][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.496][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.499][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.513][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.520][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.522][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.527][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.528][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.532][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.538][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.539][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.544][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.545][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.585][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-07-12 16:02:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:30.603][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-07-12 16:02:30.603][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:30.604][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:30.608][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml.
biodb.DEBUG[2025-07-12 16:02:30.609][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:30.610][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:30.611][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:30.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:30.621][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.627][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.628][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.630][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.633][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.635][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.639][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.640][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.642][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.645][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.654][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.655][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.657][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.658][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.661][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.667][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.673][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.682][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.718][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-07-12 16:02:30.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:30.737][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-07-12 16:02:30.738][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:30.739][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:30.742][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml.
biodb.DEBUG[2025-07-12 16:02:30.743][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:30.744][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:30.745][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:30.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:30.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.758][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.762][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.763][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.764][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.765][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.768][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.771][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.783][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.787][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.788][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.789][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.796][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.799][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.805][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.809][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.810][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.811][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.815][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.816][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.817][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.822][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.858][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-07-12 16:02:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:30.876][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-07-12 16:02:30.877][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:30.878][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:30.881][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml.
biodb.DEBUG[2025-07-12 16:02:30.882][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:30.883][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:30.884][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:30.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:30.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:30.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:30.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:30.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:30.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:30.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:30.895][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.902][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.903][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.905][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:30.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.909][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:30.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.916][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:30.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:30.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:30.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.928][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:30.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.931][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.935][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:30.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.937][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.944][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:30.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.950][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.950][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.953][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:30.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:30.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:30.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:30.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:30.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:30.991][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-07-12 16:02:30.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:30.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:30.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:31.009][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-07-12 16:02:31.010][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:31.011][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:31.014][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml.
biodb.DEBUG[2025-07-12 16:02:31.015][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:31.016][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:31.023][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:31.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.035][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.041][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.042][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.047][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.053][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.055][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.065][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.068][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.069][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.076][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.079][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.081][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.085][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.086][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.087][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.092][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.128][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-07-12 16:02:31.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:31.146][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-07-12 16:02:31.147][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:31.148][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:31.151][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml.
biodb.DEBUG[2025-07-12 16:02:31.152][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:31.153][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:31.154][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:31.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.165][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.172][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.173][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.174][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.178][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.181][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.200][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.203][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.218][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.219][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.220][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.224][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.227][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.272][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-07-12 16:02:31.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:31.289][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-07-12 16:02:31.290][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:31.291][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:31.294][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml.
biodb.DEBUG[2025-07-12 16:02:31.295][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:31.296][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:31.297][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:31.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.307][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.319][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.327][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.333][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.337][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.338][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.340][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.342][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.343][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.347][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.349][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.352][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.358][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.359][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.361][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.365][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.400][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-07-12 16:02:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:31.418][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-07-12 16:02:31.418][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:31.420][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:31.423][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml.
biodb.DEBUG[2025-07-12 16:02:31.423][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:31.424][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:31.425][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:31.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.436][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.439][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.442][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.443][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.446][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.448][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.462][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.468][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.469][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.478][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.491][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.497][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.498][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.499][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.500][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.506][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.538][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-07-12 16:02:31.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:31.558][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-07-12 16:02:31.559][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:31.560][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:31.562][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml.
biodb.DEBUG[2025-07-12 16:02:31.563][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:31.564][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:31.564][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:31.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.576][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.577][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.578][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.583][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.585][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.589][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.596][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.597][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.598][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.602][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.603][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.605][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.609][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.610][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.612][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.613][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.616][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.619][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.624][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.628][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.634][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.640][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.676][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-07-12 16:02:31.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-07-12 16:02:31.695][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-07-12 16:02:31.696][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-07-12 16:02:31.697][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-07-12 16:02:31.700][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml.
biodb.DEBUG[2025-07-12 16:02:31.701][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-07-12 16:02:31.708][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-07-12 16:02:31.709][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-07-12 16:02:31.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.721][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.723][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.727][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.728][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:31.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.734][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.736][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:31.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.740][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.743][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:31.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:31.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.749][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:31.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.753][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.753][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:31.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.755][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.756][ef$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.756][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.758][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.759][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-07-12 16:02:31.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:31.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.764][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.768][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:31.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:31.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.775][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.775][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-07-12 16:02:31.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:31.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.781][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.782][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.783][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:31.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:31.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:31.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:31.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.817][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-07-12 16:02:31.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:31.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:31.863][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:31.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.880][private$selectFields]
biodb.TRACE[2025-07-12 16:02:31.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:31.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:31.883][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.890][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.894][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:31.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:31.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.921][private$selectFields]
biodb.TRACE[2025-07-12 16:02:31.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:31.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:31.924][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.927][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.937][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.942][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.952][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:31.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:31.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:31.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:31.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:31.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:31.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.969][private$selectFields]
biodb.TRACE[2025-07-12 16:02:31.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:31.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:31.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.978][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:31.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.982][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:31.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:31.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:31.992][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:31.993][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:31.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:31.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:31.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:32.005][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:32.007][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:32.011][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-12 16:02:32.012][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:32.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.090][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:32.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.108][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.108][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.113][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.114][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.115][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.116][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.118][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.122][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:32.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.150][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.151][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.152][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.153][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.156][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.160][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.163][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.164][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.182][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:32.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.199][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.200][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.201][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.209][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.213][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:32.225][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:32.225][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:32.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:32.255][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:32.257][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:32.261][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-12 16:02:32.262][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:32.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.393][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:32.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.410][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.411][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.412][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.416][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.426][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.428][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.431][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.432][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:32.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.458][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.467][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.468][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.470][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.470][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:32.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.496][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.505][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.506][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.509][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.509][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-07-12 16:02:32.521][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:32.521][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:32.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:32.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:32.535][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:32.539][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-07-12 16:02:32.540][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:32.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.619][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:32.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.636][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.637][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.639][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.642][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.646][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.650][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.667][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-07-12 16:02:32.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.683][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.691][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.693][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.696][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.706][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:32.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.723][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.725][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.728][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.731][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.733][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.736][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.737][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-07-12 16:02:32.747][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:32.748][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:32.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:32.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:32.762][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:32.764][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-07-12 16:02:32.765][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:32.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:32.856][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:32.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.873][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.876][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.877][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.882][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.883][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.893][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-07-12 16:02:32.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.920][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.922][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.930][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.934][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.944][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-07-12 16:02:32.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:32.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:32.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:32.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:32.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:32.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:32.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:32.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.960][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.961][private$selectFields]
biodb.TRACE[2025-07-12 16:02:32.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:32.962][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:32.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.967][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.970][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.972][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:32.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.975][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.975][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:32.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:32.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-07-12 16:02:32.987][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:32.988][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:33.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:33.019][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:33.021][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:33.023][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:33.023][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:33.026][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:33.028][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:33.030][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:33.031][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:33.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.089][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:33.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.108][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.112][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.114][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.117][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.119][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.122][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.123][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:33.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.158][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.161][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.163][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.167][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.168][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.171][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.172][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.182][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:33.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.199][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.199][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.202][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.204][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.209][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.213][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:33.224][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:33.225][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:33.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:33.237][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:33.239][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:33.241][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:33.241][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:33.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.301][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:33.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.319][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.329][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.333][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.333][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:33.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.361][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.362][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.363][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.370][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.371][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.371][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.374][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.381][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.393][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:33.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.411][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.412][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.413][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.417][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.422][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.425][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.425][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.436][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:33.437][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:33.438][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:33.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:33.450][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:33.452][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:33.455][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:33.456][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:33.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.514][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:33.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.535][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.536][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.540][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.546][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.550][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:33.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.580][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.585][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.590][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.594][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.605][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-07-12 16:02:33.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.623][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.623][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.625][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.635][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.639][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.641][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.645][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-07-12 16:02:33.656][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:33.657][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:33.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:33.686][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:33.689][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:33.692][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-07-12 16:02:33.693][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:33.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:33.845][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:33.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.862][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.863][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.863][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.864][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.872][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.882][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-07-12 16:02:33.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.911][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.921][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.924][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-07-12 16:02:33.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:33.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.952][private$selectFields]
biodb.TRACE[2025-07-12 16:02:33.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:33.953][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:33.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.955][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.956][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.957][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.958][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.961][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.962][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:33.963][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.966][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:33.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:33.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:33.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-07-12 16:02:33.977][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:33.978][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:33.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:33.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:33.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:33.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:33.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:33.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:33.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:33.990][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:33.992][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:33.996][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-07-12 16:02:33.997][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:34.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.572][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:34.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.589][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.589][private$selectFields]
biodb.TRACE[2025-07-12 16:02:34.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:34.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:34.591][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.594][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.597][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.599][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.609][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:34.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-07-12 16:02:34.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.637][private$selectFields]
biodb.TRACE[2025-07-12 16:02:34.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:34.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:34.639][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.642][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.645][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.646][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.649][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:34.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.659][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-07-12 16:02:34.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.676][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.676][private$selectFields]
biodb.TRACE[2025-07-12 16:02:34.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:34.678][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:34.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.681][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.686][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.689][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.689][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:34.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.700][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-07-12 16:02:34.701][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:34.701][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:34.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:34.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:34.716][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:34.719][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-07-12 16:02:34.720][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:34.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:34.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:34.801][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:34.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.819][private$selectFields]
biodb.TRACE[2025-07-12 16:02:34.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:34.820][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:34.821][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.828][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.829][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.833][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.852][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-07-12 16:02:34.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.869][private$selectFields]
biodb.TRACE[2025-07-12 16:02:34.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:34.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:34.871][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.872][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.873][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.879][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.882][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.893][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-07-12 16:02:34.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:34.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:34.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:34.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:34.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:34.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:34.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:34.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.910][private$selectFields]
biodb.TRACE[2025-07-12 16:02:34.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:34.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:34.912][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.919][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-07-12 16:02:34.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.923][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-07-12 16:02:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-07-12 16:02:34.933][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:34.934][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:34.951][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:34.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:34.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.955][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.958][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:34.965][biodb::testThat]
biodb.INFO [2025-07-12 16:02:34.966][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-07-12 16:02:34.967][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-07-12 16:02:34.967][biodb::testThat]
biodb.TRACE[2025-07-12 16:02:34.970][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.973][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:34.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.977][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-07-12 16:02:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-07-12 16:02:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:34.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:34.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:35.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:35.032][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:35.034][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:35.035][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:35.036][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:35.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:35.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:35.057][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:35.059][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:35.061][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:35.062][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:35.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:35.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:35.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:35.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:35.110][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:35.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.157][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.175][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.191][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.191][private$selectFields]
biodb.TRACE[2025-07-12 16:02:35.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:35.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:35.193][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.194][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.196][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.197][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.203][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.213][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.215][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.216][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.218][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.219][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.220][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.222][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.223][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.229][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.229][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.235][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.236][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.240][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.241][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.245][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.248][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.249][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.250][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.252][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.253][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.255][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.256][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.259][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.259][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.261][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.262][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.265][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.268][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:35.269][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:35.269][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.270][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.272][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.273][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.278][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.279][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.282][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.283][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.285][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.289][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.289][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.292][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.294][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.295][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.296][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.301][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.302][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.305][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.389][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.424][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-07-12 16:02:35.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.481][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.484][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.501][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.521][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.521][private$selectFields]
biodb.TRACE[2025-07-12 16:02:35.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:35.523][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:35.524][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.525][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.528][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.535][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.537][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.538][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.539][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.541][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.542][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.544][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.545][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.554][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.555][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.561][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.562][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.564][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.568][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.570][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.570][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.573][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.573][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.574][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.576][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.579][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.580][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.582][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.583][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.585][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.589][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.590][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.591][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.592][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.593][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.594][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.596][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.597][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.598][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.599][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.600][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.601][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.602][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.603][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.604][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.605][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.607][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.608][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.609][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.612][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.615][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.618][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.618][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.621][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.624][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.626][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.627][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.630][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.631][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.633][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.637][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.637][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.638][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.640][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.641][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.643][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.644][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.645][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.646][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.647][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.708][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.712][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.738][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.741][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-12 16:02:35.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:35.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:35.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:35.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:35.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:35.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:35.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.827][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.864][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.865][private$selectFields]
biodb.TRACE[2025-07-12 16:02:35.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:35.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:35.867][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:35.868][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.871][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.872][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.881][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.883][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.886][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.887][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.889][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.890][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.895][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.895][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.896][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.902][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.905][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.908][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.909][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.914][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.916][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:35.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.927][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.927][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.933][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.936][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.941][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.942][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:35.943][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:35.944][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.944][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.947][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.947][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.950][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:35.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.953][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:35.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:35.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:35.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:35.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.959][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:35.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.961][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.962][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:35.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.964][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.965][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.966][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:35.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.967][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.968][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.969][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:35.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.970][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.971][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:35.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:35.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:35.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:35.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.977][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:35.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:35.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:35.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.989][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.993][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:35.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:35.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:35.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:36.096][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:36.097][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:36.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:36.110][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:36.112][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:36.114][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:36.115][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:36.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:36.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:36.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:36.160][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:36.163][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:36.163][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:36.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:36.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:36.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:36.226][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:36.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.466][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.467][private$selectFields]
biodb.TRACE[2025-07-12 16:02:36.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:36.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:36.469][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.470][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.472][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.477][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.478][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.484][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.484][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.489][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.490][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.492][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.495][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.498][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.502][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.508][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.509][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.514][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.520][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.521][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.522][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.524][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.525][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.527][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.528][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.534][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.535][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.537][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.538][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.544][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.545][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.546][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.547][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.550][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.553][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.558][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.559][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.562][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.565][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.565][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.574][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.581][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.582][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.583][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.585][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.586][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.589][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.590][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.591][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.593][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.594][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:36.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.614][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.679][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.736][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:36.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:36.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:36.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:36.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:36.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:36.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:36.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:36.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.801][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.815][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.816][private$selectFields]
biodb.TRACE[2025-07-12 16:02:36.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:36.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:36.818][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.819][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.821][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.822][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.823][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.824][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.825][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.827][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.828][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.830][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.833][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.839][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.844][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.845][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.845][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.847][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.847][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.850][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.851][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.852][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.854][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.858][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.861][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.862][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.868][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.868][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.870][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.870][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.871][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.872][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.873][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.882][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.885][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.887][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.887][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.891][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.891][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:36.892][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.895][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.896][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.898][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.899][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.901][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.906][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.907][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.909][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.909][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.910][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.911][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.912][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.918][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.918][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:36.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.920][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.920][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:36.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:36.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:36.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:36.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.926][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:36.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:36.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:36.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:36.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:36.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.977][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.983][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:36.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:36.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:36.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:36.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.003][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.007][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.009][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.015][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:37.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.077][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.080][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.115][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.115][private$selectFields]
biodb.TRACE[2025-07-12 16:02:37.116][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:37.117][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:37.118][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.118][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.121][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.121][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.124][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.126][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.127][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.130][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.133][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.133][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.135][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.138][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.139][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.141][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.142][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.144][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.144][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.145][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.146][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.147][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.148][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.149][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.150][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.153][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.155][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.155][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.158][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.159][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.160][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.161][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.163][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.166][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.166][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.167][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.171][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.172][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.174][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.175][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.177][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.177][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.178][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.180][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.183][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.185][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.185][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:37.186][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:37.187][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.190][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.190][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.195][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.196][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.201][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.204][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.207][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.208][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.210][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.211][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.213][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.218][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.220][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:37.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.303][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.306][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:37.336][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:37.337][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:37.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:37.349][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:37.351][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:37.353][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:37.354][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:37.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:37.495][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:37.497][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:37.498][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:37.499][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:37.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:37.560][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:37.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.640][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.640][private$selectFields]
biodb.TRACE[2025-07-12 16:02:37.641][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:37.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:37.642][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.643][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.646][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.647][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.649][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.649][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.654][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.655][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.656][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.657][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.658][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.659][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.660][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.660][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.663][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.664][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.665][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.666][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.668][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.670][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.671][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.673][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.674][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.676][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.677][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.679][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.679][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.680][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.681][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.684][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.685][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.690][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.692][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.696][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.698][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.699][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.701][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.701][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.702][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.703][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.704][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.705][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.706][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.707][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.710][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.710][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.711][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.714][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.715][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.720][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.722][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.723][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.724][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.725][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.726][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.727][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.728][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.729][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.730][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.731][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.732][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.733][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.734][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.735][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.736][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.737][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.737][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.739][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.740][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.742][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.743][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.745][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.746][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:37.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.766][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.804][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.806][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.809][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.860][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-07-12 16:02:37.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:37.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:37.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:37.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:37.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:37.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:37.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:37.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.907][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.943][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.943][private$selectFields]
biodb.TRACE[2025-07-12 16:02:37.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:37.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:37.945][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:37.946][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.949][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.949][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.954][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.954][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.957][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.959][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.962][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.963][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.963][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:37.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.965][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.966][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:37.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.968][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.968][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:37.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.971][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.971][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.972][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:37.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.974][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:37.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:37.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.977][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:37.978][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:37.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.983][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.983][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:37.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:37.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.985][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.986][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:37.987][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:37.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.988][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:37.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.991][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.992][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:37.993][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:37.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.994][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:37.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:37.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:37.997][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:37.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.999][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:37.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.000][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.001][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.003][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.004][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.009][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.010][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.011][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.012][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.014][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.015][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.016][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.018][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:38.018][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:38.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.020][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.021][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.022][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.022][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.027][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.027][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.029][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.030][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.031][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.032][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.035][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.036][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.041][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.041][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.043][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.045][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.046][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.047][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.048][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.049][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:38.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.063][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.125][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.135][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-07-12 16:02:38.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.198][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.218][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.232][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.233][private$selectFields]
biodb.TRACE[2025-07-12 16:02:38.233][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:38.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:38.235][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.236][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.238][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.239][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.244][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.255][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.256][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.259][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.261][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.262][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.262][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.264][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.265][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.267][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.268][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.270][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.272][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.273][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.273][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.278][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.279][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.280][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.283][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.286][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.287][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.289][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.289][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.292][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.293][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.295][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.296][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.296][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.298][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.299][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.301][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.302][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.304][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.305][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:38.306][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:38.306][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.309][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.309][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.310][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.312][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.315][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.321][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.324][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.324][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.326][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.329][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.330][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.331][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.335][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.336][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.336][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.339][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:38.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.348][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.351][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.416][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.444][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:38.445][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:38.445][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:38.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:38.461][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:38.463][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:38.465][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-07-12 16:02:38.465][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:38.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:38.485][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:38.487][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:38.488][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-07-12 16:02:38.489][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:38.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:38.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:38.526][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:38.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.541][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.570][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.573][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.586][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.610][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.610][private$selectFields]
biodb.TRACE[2025-07-12 16:02:38.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:38.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:38.612][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.613][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.616][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.617][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.619][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.622][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.623][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.625][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.632][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.633][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.635][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.636][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.636][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.638][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.639][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.641][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.644][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.644][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.646][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.647][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.649][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.650][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.650][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.652][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.652][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.653][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.654][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.655][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.657][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.658][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.660][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.663][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.664][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.665][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.666][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.667][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.669][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.672][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.675][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.676][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.681][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.683][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.685][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.688][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.689][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.690][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.691][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.692][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:38.693][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:38.694][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.697][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.697][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.699][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.700][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.702][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.704][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.706][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.707][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.708][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.710][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.712][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.714][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.715][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.716][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.717][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.718][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.721][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.724][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.725][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.737][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.796][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.799][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-07-12 16:02:38.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:38.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:38.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:38.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:38.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:38.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:38.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.896][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.910][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.916][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.916][private$selectFields]
biodb.TRACE[2025-07-12 16:02:38.917][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:38.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:38.918][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.922][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.938][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.938][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.942][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.944][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.945][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.947][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.950][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.951][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.952][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.953][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.954][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.955][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.957][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.958][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.959][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.960][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.963][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.963][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:38.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:38.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.965][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:38.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:38.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.968][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:38.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.971][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.972][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:38.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.974][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:38.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.976][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:38.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.979][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.980][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.981][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:38.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.982][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.983][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:38.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:38.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.985][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:38.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:38.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.988][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.989][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:38.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.991][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.992][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:38.993][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:38.993][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:38.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.995][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.995][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:38.996][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:38.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:38.998][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:38.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:38.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.000][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.001][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.004][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.006][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.007][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.009][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.010][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.010][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.012][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.012][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.015][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.017][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.018][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.019][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.020][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.021][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.023][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.023][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.024][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.025][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.026][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:39.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.042][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.082][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.088][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-12 16:02:39.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:39.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.182][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.185][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.223][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.224][private$selectFields]
biodb.TRACE[2025-07-12 16:02:39.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:39.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:39.226][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.229][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.230][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.231][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.242][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.243][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.246][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.247][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.248][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.248][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.250][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.253][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.256][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.258][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.259][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.260][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.261][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.262][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.263][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.268][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.269][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.271][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.272][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.273][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.276][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.277][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.278][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.285][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.286][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.288][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.289][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.291][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.292][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.292][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.294][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.295][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.296][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.297][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.298][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.304][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.305][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.307][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.307][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.309][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.315][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.340][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:39.342][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:39.343][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.348][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.349][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.352][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.357][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.358][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.362][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.363][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.364][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.366][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.369][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.369][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.372][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.372][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.374][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.375][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.377][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.378][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.381][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.381][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.383][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:39.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.393][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:39.483][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:39.484][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:39.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:39.496][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:39.498][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:39.500][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-07-12 16:02:39.500][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:39.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:39.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:39.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:39.543][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:39.545][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-07-12 16:02:39.546][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:39.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:39.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:39.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:39.602][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:39.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:39.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.646][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.683][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.686][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.687][private$selectFields]
biodb.TRACE[2025-07-12 16:02:39.688][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:39.688][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:39.689][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.690][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.692][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.693][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.694][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.695][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.698][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.699][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.701][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.703][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.704][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.706][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.707][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.708][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.709][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.710][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.711][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.712][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.713][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.716][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.717][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.718][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.719][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.720][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.722][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.723][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.724][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.726][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.726][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.727][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.729][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.729][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.731][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.732][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.733][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.734][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.737][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.738][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.740][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.743][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.746][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.752][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.753][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.756][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.759][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.760][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.762][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.762][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.765][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.765][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.766][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.767][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.768][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.769][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.770][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.771][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.772][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:39.772][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.774][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.775][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.777][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.780][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.781][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.783][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.783][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.784][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.785][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.786][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.788][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.789][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.791][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.791][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.793][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.796][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.797][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.798][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.799][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.800][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.802][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.802][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.803][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.804][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.805][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:39.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.864][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.916][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:39.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:39.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:39.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:39.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:39.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:39.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:39.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:39.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:39.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:39.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:39.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:39.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:39.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:39.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:39.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:39.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:39.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:39.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:39.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:39.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:39.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:39.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.002][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.003][private$selectFields]
biodb.TRACE[2025-07-12 16:02:40.004][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:40.004][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:40.005][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.006][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.009][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.009][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.011][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.014][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.016][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.017][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.019][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.020][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.022][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.023][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.024][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.025][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.027][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.030][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.031][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.033][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.033][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.035][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.036][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.037][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.038][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.039][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.040][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.041][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.044][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.044][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.045][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.049][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.050][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.052][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.053][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.055][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.058][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.059][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.061][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.061][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.062][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.064][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.067][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.068][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.068][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.070][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.070][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.071][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.072][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.074][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.075][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.076][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.077][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.078][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.079][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.079][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.080][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.082][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.083][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.084][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.085][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.086][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.088][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.088][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.091][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.093][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.096][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.098][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.099][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.100][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.102][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.104][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.105][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.107][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.108][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.109][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.110][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.111][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.111][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.113][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.114][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:40.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.171][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.196][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.199][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:40.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.271][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.285][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.303][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.305][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.308][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.309][private$selectFields]
biodb.TRACE[2025-07-12 16:02:40.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:40.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:40.311][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.312][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.314][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.315][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.317][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.320][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.320][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.321][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.322][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.325][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.328][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.329][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.330][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.331][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.332][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.334][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.337][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.337][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.339][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.340][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.342][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.343][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.344][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.345][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.346][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.347][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.348][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.349][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.351][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.352][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.354][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.355][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.357][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.358][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.360][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.360][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.361][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.363][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.363][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.364][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.365][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.366][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.369][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.369][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.372][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.372][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.374][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.375][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.380][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.381][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.382][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.383][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.384][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.387][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.387][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.388][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.390][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:40.391][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:40.391][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.393][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.394][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.395][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.396][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.397][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.398][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.399][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.399][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.400][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.401][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.404][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.405][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.406][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.407][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.408][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.410][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.410][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.412][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.413][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.414][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.415][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.416][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.418][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.418][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.419][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.420][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.421][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:40.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.489][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.495][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:40.520][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:40.521][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:40.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:40.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:40.535][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:40.536][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-07-12 16:02:40.537][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:40.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-07-12 16:02:40.684][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:40.686][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:40.687][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-07-12 16:02:40.688][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:40.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:40.743][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:40.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:40.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:40.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:40.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:40.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:40.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:40.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.759][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.791][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.832][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.833][private$selectFields]
biodb.TRACE[2025-07-12 16:02:40.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:40.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:40.835][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.836][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.838][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.839][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.842][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.843][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.844][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.845][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.846][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.847][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.849][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.850][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.851][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.855][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.860][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.863][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.865][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.866][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.867][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.869][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.869][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.871][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.874][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.875][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.877][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.880][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.881][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.883][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.884][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.884][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.886][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.887][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.889][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.890][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.892][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.892][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.893][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.895][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.895][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.896][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.899][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.902][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.902][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.905][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.905][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.907][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.908][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:40.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.910][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.911][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:40.912][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.913][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.914][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.915][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.915][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.917][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.919][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.920][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.922][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.923][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.926][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.926][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.929][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.929][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:40.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.931][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.931][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:40.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.934][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:40.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.937][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.938][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:40.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.940][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:40.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:40.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.943][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:40.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:40.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.946][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:40.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:40.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:40.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:40.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:40.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:40.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-07-12 16:02:41.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:41.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:41.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:41.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:41.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:41.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:41.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:41.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.108][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.111][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.129][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.148][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:41.149][private$selectFields]
biodb.TRACE[2025-07-12 16:02:41.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:41.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:41.151][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:41.152][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.155][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.155][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.160][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.161][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.162][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.165][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.166][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.167][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.171][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.172][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.174][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.177][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.178][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.181][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.183][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.184][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.185][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.187][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.188][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.190][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.193][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.194][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.196][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.199][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.205][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.206][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.207][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.209][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.210][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.211][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.212][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.213][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.217][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.217][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.220][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.220][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.223][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.224][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.226][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.226][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.228][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:41.229][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:41.230][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.232][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.233][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.234][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.235][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.238][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.239][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.244][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.245][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.247][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.247][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.248][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.254][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.257][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.258][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.260][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.261][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.262][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.264][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.266][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:41.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.367][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-07-12 16:02:41.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:41.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:41.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:41.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:41.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:41.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:41.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:41.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.448][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.454][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:41.455][private$selectFields]
biodb.TRACE[2025-07-12 16:02:41.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:41.456][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:41.457][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:41.458][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.460][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.470][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.473][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.474][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.476][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.479][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.480][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.482][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.483][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.485][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.487][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.488][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.489][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.490][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.491][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.493][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.496][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.496][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.497][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.499][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.502][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.503][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.507][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.509][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.510][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.514][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.518][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.518][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.521][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.524][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.525][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.526][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.527][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.529][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.532][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.532][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.533][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:41.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.535][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:41.536][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:41.536][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.538][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.539][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.540][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.543][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.544][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.545][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.547][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.550][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.551][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.553][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.554][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.558][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.559][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.561][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.563][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.565][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.567][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.644][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.670][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:41.671][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:41.672][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:41.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:41.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:41.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:41.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:41.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:41.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:41.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:41.728][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:41.730][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:41.731][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:41.732][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:41.735][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:41.737][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:41.738][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:41.739][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:41.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:41.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:41.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:41.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:41.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:41.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:41.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:41.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:41.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:41.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:41.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:41.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:41.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:41.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:41.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:41.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:41.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:41.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:41.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:41.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:41.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:41.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:41.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:41.793][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:41.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:41.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:41.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:41.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:41.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:41.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:41.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:41.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.822][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.841][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.877][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:41.877][private$selectFields]
biodb.TRACE[2025-07-12 16:02:41.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:41.879][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:41.879][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:41.880][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.883][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.889][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.892][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.898][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.902][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.905][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.906][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.911][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.913][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.913][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.916][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.917][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.922][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.933][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.938][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.941][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.941][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.943][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.946][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.949][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.951][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.951][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:41.952][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:41.953][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.956][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.957][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.959][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.959][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:41.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.961][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.962][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:41.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:41.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.964][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:41.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:41.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.967][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.967][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:41.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.969][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:41.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.972][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:41.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.975][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:41.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.978][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.979][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.979][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:41.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.981][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.981][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:41.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:41.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.983][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.984][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:41.985][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:41.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.986][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.987][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:41.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:41.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:41.998][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:41.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.018][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.042][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.071][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.074][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:42.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:42.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:42.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:42.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:42.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:42.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:42.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:42.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.115][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.147][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.179][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.179][private$selectFields]
biodb.TRACE[2025-07-12 16:02:42.180][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:42.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:42.181][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.182][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.185][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.191][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.196][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.197][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.198][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.199][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.201][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.201][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.207][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.207][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.209][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.210][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.212][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.218][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.218][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.220][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.223][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.227][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.231][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.232][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.236][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.240][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.240][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.242][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.246][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.247][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.248][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.249][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.249][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.252][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.253][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.254][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.258][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.263][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.266][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.267][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.267][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.269][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.269][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.271][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.274][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.275][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.277][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.277][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.279][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.282][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.283][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.339][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.342][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.345][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-12 16:02:42.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:42.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:42.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:42.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:42.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:42.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:42.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:42.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.440][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.444][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.477][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.478][private$selectFields]
biodb.TRACE[2025-07-12 16:02:42.478][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:42.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:42.480][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.480][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.484][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.484][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.486][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.487][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.488][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.489][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.491][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.492][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.494][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.501][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.503][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.504][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.506][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.507][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.508][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.509][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.510][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.512][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.512][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.513][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.515][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.516][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.518][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.518][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.524][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.527][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.528][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.529][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.531][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.532][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.533][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.534][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.535][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.536][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.538][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.547][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.548][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.550][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.553][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.554][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.556][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:42.557][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:42.558][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.560][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.561][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.563][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.566][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.566][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.567][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.572][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.572][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.573][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.575][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.580][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.581][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.581][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.584][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.588][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.589][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.603][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:42.693][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:42.694][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:42.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:42.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:42.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:42.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:42.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:42.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:42.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:42.707][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:42.708][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:42.711][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:42.711][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:42.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:42.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:42.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:42.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:42.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:42.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:42.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:42.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:42.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:42.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:42.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:42.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:42.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:42.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:42.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:42.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:42.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:42.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:42.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:42.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:42.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:42.772][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:42.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:42.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:42.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:42.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:42.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:42.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:42.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.790][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.849][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.850][private$selectFields]
biodb.TRACE[2025-07-12 16:02:42.851][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:42.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:42.852][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.853][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.853][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.855][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.856][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.860][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.861][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.863][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.866][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.867][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.868][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.870][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.871][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.872][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.873][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.880][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.880][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.882][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.887][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.888][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.891][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.893][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.895][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.896][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.900][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.905][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.907][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.909][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.913][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.914][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.916][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.920][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.921][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.922][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:42.923][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.925][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.926][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.928][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.931][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.931][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.932][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.937][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.938][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:42.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.940][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.940][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:42.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.942][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:42.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:42.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.947][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.948][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:42.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.950][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.951][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:42.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:42.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.953][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:42.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:42.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.957][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:42.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:42.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:42.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:42.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:42.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:42.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.020][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.069][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:43.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:43.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:43.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:43.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:43.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:43.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:43.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.088][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.115][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.150][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:43.151][private$selectFields]
biodb.TRACE[2025-07-12 16:02:43.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:43.153][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:43.153][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:43.154][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.156][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.157][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.158][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.159][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.162][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.163][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.165][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.168][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.171][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.172][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.173][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.174][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.175][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.177][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.180][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.181][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.184][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.187][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.190][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.198][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.199][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.203][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.206][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.211][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.212][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.214][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.215][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.220][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.220][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.221][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.223][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.223][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.226][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.227][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.229][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.229][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:43.230][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:43.231][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.234][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.235][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.236][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.237][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.238][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.240][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.241][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.248][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.249][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.250][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.254][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.255][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.256][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.257][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.258][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.260][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.260][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.263][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.263][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:43.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.339][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:43.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:43.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:43.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:43.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:43.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:43.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:43.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:43.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.387][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.444][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.457][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:43.458][private$selectFields]
biodb.TRACE[2025-07-12 16:02:43.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:43.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:43.460][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:43.461][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.462][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.464][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.465][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.466][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.469][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.477][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.478][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.479][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.486][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.487][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.490][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.492][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.493][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.494][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.496][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.499][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.500][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.503][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.505][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.506][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.513][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.515][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.517][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.522][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.523][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.524][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.526][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.527][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.528][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.532][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.532][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:43.533][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:43.534][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.537][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.537][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.538][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.543][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.547][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.552][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.555][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.558][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.559][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.559][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.561][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.562][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.563][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.564][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.567][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.568][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:43.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:43.676][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:43.677][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:43.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:43.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:43.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:43.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:43.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:43.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:43.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:43.688][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:43.690][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:43.692][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:43.693][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:43.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:43.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:43.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:43.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:43.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:43.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:43.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:43.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:43.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:43.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:43.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:43.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:43.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:43.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:43.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:43.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:43.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:43.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:43.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:43.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:43.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:43.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:43.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:43.747][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:43.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:43.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:43.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:43.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:43.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:43.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:43.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:43.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.797][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.814][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.829][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:43.830][private$selectFields]
biodb.TRACE[2025-07-12 16:02:43.831][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:43.832][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:43.832][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:43.833][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.836][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.836][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.837][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.839][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.842][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.845][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.846][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.848][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.849][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.851][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.852][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.854][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.855][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.855][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.857][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.865][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.868][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.868][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.871][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.872][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.873][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.874][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.877][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.884][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.887][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.888][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.889][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.890][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.891][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.893][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.894][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.896][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.896][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.898][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.899][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.900][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.901][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.902][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.904][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.905][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.906][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.907][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.908][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:43.909][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:43.910][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.913][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.913][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.918][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.920][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.927][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:43.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.930][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:43.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:43.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.935][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.936][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:43.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.938][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:43.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:43.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:43.941][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:43.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.944][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:43.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:43.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:43.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:43.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:43.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:43.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:43.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:43.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:43.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:43.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.002][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.058][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-07-12 16:02:44.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:44.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:44.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:44.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:44.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:44.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:44.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:44.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.073][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.108][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.111][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.143][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:44.143][private$selectFields]
biodb.TRACE[2025-07-12 16:02:44.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:44.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:44.145][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:44.146][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.149][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.149][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.150][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.152][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.155][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.158][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.161][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.162][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.165][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.168][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.170][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.171][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.171][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.173][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.174][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.174][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.176][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.177][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.177][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.179][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.180][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.182][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.182][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.185][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.186][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.186][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.188][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.191][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.192][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.194][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.200][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.201][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.203][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.209][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.210][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.211][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.218][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:44.219][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:44.220][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.223][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.223][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.228][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.233][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.236][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.237][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.239][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.241][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.242][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.243][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.244][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.245][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.247][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.247][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.248][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.250][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.250][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.331][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.356][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-07-12 16:02:44.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:44.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:44.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:44.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:44.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:44.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:44.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:44.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.376][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.402][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.421][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.439][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:44.440][private$selectFields]
biodb.TRACE[2025-07-12 16:02:44.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:44.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:44.442][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:44.443][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.443][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.445][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.446][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.448][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.451][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.452][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.454][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.457][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.460][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.461][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.463][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.463][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.465][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.468][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.469][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.470][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.471][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.472][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.474][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.475][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.475][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.477][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.478][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.480][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.481][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.492][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.492][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.495][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.495][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.496][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.498][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.499][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.501][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.502][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.504][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.504][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.505][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.507][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.510][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.515][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.518][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:44.519][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:44.519][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.521][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.522][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.523][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.524][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.525][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.526][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.527][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.528][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.530][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.533][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.534][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.536][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.536][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.539][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.541][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.542][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.543][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.544][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.545][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.547][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.548][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.550][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.550][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:44.652][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:44.653][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:44.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:44.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:44.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:44.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:44.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:44.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:44.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:44.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:44.673][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:44.674][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-07-12 16:02:44.675][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-07-12 16:02:44.677][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:44.680][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:44.681][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-07-12 16:02:44.682][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:44.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:44.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:44.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:44.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:44.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:44.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:44.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:44.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:44.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:44.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:44.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:44.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:44.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:44.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:44.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:44.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:44.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:44.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:44.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:44.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:44.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:44.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:44.743][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:44.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:44.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:44.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:44.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:44.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:44.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:44.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:44.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.761][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.787][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.790][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.807][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.813][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:44.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:44.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.827][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:44.827][private$selectFields]
biodb.TRACE[2025-07-12 16:02:44.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:44.829][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:44.829][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:44.830][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.832][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.833][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.834][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.835][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.838][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.839][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.840][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.841][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.844][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.847][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.848][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.848][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.850][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.850][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.853][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.855][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.856][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.857][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.858][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.861][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.862][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.862][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.864][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:44.865][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:44.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.866][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.867][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.869][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.870][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.872][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.875][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.876][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.878][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.879][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.880][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.881][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.882][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.883][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.886][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.886][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.889][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.890][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.895][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.896][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.898][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.900][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.903][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.903][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:44.904][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:44.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.905][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.906][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:44.907][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:44.907][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.910][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.910][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.911][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.912][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.916][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.922][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.927][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:44.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.929][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.932][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.933][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.933][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:44.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.935][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.935][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:44.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.937][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.938][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:44.939][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:44.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.941][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:44.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:44.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:44.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:44.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.974][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:44.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:44.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:44.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.027][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.030][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:45.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:45.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:45.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:45.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:45.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:45.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:45.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.143][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.143][private$selectFields]
biodb.TRACE[2025-07-12 16:02:45.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:45.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:45.145][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.146][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.148][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.149][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.150][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.151][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.154][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.154][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.157][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.164][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.167][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.169][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.170][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.172][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.175][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.176][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.178][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.181][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.184][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.184][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.185][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.186][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.187][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.189][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.190][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.190][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.192][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.195][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.195][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.196][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.197][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.200][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.201][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.203][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.203][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.204][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.206][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.209][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.211][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.211][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.212][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.215][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.217][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.217][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.218][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.220][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.221][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.223][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.223][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.224][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.226][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.227][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.228][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.229][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.232][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.233][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.236][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.238][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.240][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.241][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.242][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.243][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.245][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.248][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.248][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.249][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.251][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.251][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.252][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.253][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.255][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.257][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:45.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.266][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.269][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.310][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.312][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.339][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.370][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-07-12 16:02:45.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:45.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:45.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:45.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:45.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:45.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:45.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:45.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.413][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.452][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.453][private$selectFields]
biodb.TRACE[2025-07-12 16:02:45.454][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:45.454][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:45.455][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.456][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.458][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.459][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.459][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.461][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.461][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.462][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.464][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.464][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.467][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.469][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.471][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.472][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.473][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.474][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.475][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.476][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.478][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.481][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.481][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.483][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.486][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.488][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.489][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.490][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.490][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.492][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.492][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.494][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.495][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.496][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.497][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.500][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.501][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.503][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.505][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.508][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.509][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.510][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.511][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.512][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.512][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.514][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.514][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.515][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.516][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.517][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.518][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.519][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.520][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.521][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.523][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.523][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.524][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.526][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.527][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.528][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.529][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:45.529][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:45.530][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.532][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.533][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.534][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.535][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.538][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.538][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.539][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.543][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.546][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.547][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.547][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.549][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.552][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.552][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.553][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.555][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.558][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.561][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:45.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.571][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.650][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:45.681][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:45.681][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:45.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:45.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:45.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:45.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:45.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:45.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:45.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:45.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:45.696][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:45.698][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-07-12 16:02:45.699][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:45.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:45.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:45.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:45.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:45.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:45.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:45.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:45.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:45.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:45.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:45.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:45.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:45.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:45.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:45.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:45.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:45.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:45.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:45.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:45.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:45.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:45.756][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:45.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:45.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:45.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:45.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:45.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:45.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:45.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:45.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.806][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.809][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.853][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.854][private$selectFields]
biodb.TRACE[2025-07-12 16:02:45.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:45.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:45.856][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.857][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.859][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.860][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.862][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.864][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.865][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.867][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.871][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.874][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.876][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.877][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.879][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.882][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.883][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.884][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.885][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.886][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.888][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.891][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.891][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.892][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.894][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.894][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.897][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.897][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.898][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.899][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.902][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.903][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.905][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.906][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.907][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.908][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.909][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.911][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.912][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.913][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.915][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.915][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.916][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.918][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.921][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.922][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.924][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.925][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.927][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.931][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.932][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:45.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.934][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.935][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.936][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:45.936][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.937][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.939][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.939][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.940][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.942][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.945][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.946][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:45.947][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:45.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.948][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:45.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:45.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:45.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.955][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.957][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:45.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.958][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.959][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:45.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.961][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.962][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.963][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:45.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.964][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.965][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.966][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:45.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.967][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.968][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:45.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:45.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.970][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.971][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:45.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:45.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.973][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.974][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:45.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:45.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:45.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.987][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:45.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.036][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.093][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:46.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:46.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:46.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:46.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:46.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:46.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:46.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:46.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.140][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.178][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.184][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:46.185][private$selectFields]
biodb.TRACE[2025-07-12 16:02:46.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:46.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:46.187][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:46.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.190][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.191][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.191][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.193][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.196][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.197][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.198][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.199][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.201][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.202][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.205][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.206][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.206][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.208][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.208][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.211][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.214][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.214][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.215][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.216][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.217][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.219][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.221][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.222][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.223][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.224][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.225][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.226][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.228][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.229][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.231][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.234][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.235][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.235][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.237][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.240][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.243][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.244][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.245][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.246][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.247][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.248][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.249][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.252][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.253][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.256][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.256][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.257][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.259][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.259][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.260][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.262][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.268][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.269][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.270][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.271][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:46.271][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:46.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.276][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.278][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.278][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.282][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.285][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.285][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.287][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.287][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.288][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.291][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.294][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.297][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.297][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.300][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.302][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.304][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.305][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.306][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:46.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.319][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.382][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:46.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:46.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:46.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:46.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:46.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:46.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:46.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:46.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.462][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.465][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.505][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.508][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.511][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:46.512][private$selectFields]
biodb.TRACE[2025-07-12 16:02:46.513][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:46.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:46.514][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:46.515][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.517][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.517][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.518][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.520][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.522][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.525][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.528][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.531][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.532][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.533][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.534][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.535][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.537][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.537][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.540][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.540][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.542][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.543][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.545][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.546][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.547][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.548][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.549][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.550][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.551][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.552][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.554][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.555][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.557][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.560][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.560][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.563][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.565][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.567][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.568][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.571][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.572][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.574][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.577][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.578][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.579][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.580][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.581][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.583][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.586][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.587][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.588][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.590][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.590][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:46.591][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:46.592][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.594][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.595][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.597][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.601][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.601][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.611][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.611][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.612][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.617][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.618][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.619][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.620][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.621][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.624][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.625][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.627][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.641][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.710][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.744][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-07-12 16:02:46.745][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:46.746][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-07-12 16:02:46.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:46.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:46.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:46.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:46.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:46.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:46.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-07-12 16:02:46.759][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-07-12 16:02:46.761][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-07-12 16:02:46.763][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-07-12 16:02:46.764][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-07-12 16:02:46.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:46.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:46.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:46.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:46.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:46.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:46.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:46.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:46.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:46.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:46.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:46.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:46.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:46.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:46.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:46.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:46.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:46.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:46.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:46.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:46.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:46.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:46.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-07-12 16:02:46.822][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-07-12 16:02:46.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:46.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:46.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:46.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:46.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:46.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:46.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.871][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.874][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.893][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.910][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.917][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:46.918][private$selectFields]
biodb.TRACE[2025-07-12 16:02:46.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:46.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:46.920][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:46.921][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.923][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.924][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.925][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.926][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.930][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.931][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.933][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.936][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.937][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.938][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.940][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.940][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.941][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.943][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.943][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.944][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.946][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.949][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.950][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.952][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.953][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:46.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:46.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.956][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.957][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:46.958][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:46.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.959][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.960][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.966][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:46.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.968][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.968][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:46.969][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:46.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.971][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.972][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:46.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:46.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.974][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:46.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.977][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:46.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:46.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.980][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:46.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:46.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.984][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.984][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.985][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:46.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.987][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.988][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:46.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.990][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.991][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:46.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.993][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.994][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:46.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.996][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:46.997][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.998][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:46.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:46.999][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.000][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.002][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.004][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.005][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.006][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.006][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.008][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.009][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:47.010][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:47.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.013][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.013][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.016][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.019][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.020][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.022][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.025][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.028][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.031][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.032][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.034][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.037][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.038][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.039][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.040][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.041][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.043][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.044][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.045][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.046][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.047][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:47.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.064][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.080][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.114][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.137][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.144][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.171][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-07-12 16:02:47.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:47.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:47.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:47.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:47.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:47.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:47.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.188][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.224][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.243][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.269][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:47.270][private$selectFields]
biodb.TRACE[2025-07-12 16:02:47.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:47.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:47.272][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:47.272][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.275][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.276][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.276][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.278][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.279][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.279][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.281][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.282][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.284][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.285][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.286][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.287][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.288][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.290][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.291][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.293][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.294][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.296][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.299][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.300][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.303][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.304][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.305][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.306][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.310][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.310][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.311][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.313][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.314][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.316][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.317][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.318][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.319][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.323][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.326][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.329][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.329][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.330][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.332][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.332][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.333][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.335][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.336][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.338][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.339][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.339][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.341][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.342][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.343][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.344][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.345][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.347][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.350][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.351][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.352][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.353][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.354][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:47.355][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:47.356][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.358][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.359][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.361][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.364][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.365][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.367][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.370][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.372][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.373][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.374][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.377][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.380][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.380][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.381][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.383][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.383][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.386][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.386][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.389][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.389][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:47.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.400][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.406][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.504][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-07-12 16:02:47.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-07-12 16:02:47.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:47.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:47.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:47.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:47.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:47.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-07-12 16:02:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.554][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.594][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:47.595][private$selectFields]
biodb.TRACE[2025-07-12 16:02:47.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-07-12 16:02:47.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-07-12 16:02:47.597][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-07-12 16:02:47.598][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.601][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.601][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.602][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.604][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.607][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.608][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.610][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.612][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.614][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.617][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.620][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.623][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.626][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.627][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.628][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.629][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.630][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.632][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.636][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.636][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.637][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.639][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.640][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.642][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.643][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.645][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.648][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.649][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.649][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.651][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.653][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.654][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.662][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.663][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-07-12 16:02:47.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.665][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.666][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.668][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.671][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.672][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.674][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.674][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.677][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.680][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.680][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.681][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-07-12 16:02:47.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.683][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.683][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:47.684][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-07-12 16:02:47.685][ef$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.687][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.688][ef$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.689][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.690][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.693][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.694][ef$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.696][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.700][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.703][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.703][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.704][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.706][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.709][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.709][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.710][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.712][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.712][ef$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.714][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.718][ef$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.718][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-07-12 16:02:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-07-12 16:02:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-07-12 16:02:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-07-12 16:02:47.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-07-12 16:02:47.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-07-12 16:02:47.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-07-12 16:02:47.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-07-12 16:02:47.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-07-12 16:02:47.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-07-12 16:02:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-07-12 16:02:47.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-07-12 16:02:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-07-12 16:02:47.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.794][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-07-12 16:02:47.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-07-12 16:02:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-07-12 16:02:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-07-12 16:02:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-07-12 16:02:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-07-12 16:02:47.828][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-07-12 16:02:47.828][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-07-12 16:02:47.833][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:47.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.837][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:47.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:47.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-07-12 16:02:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:47.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-07-12 16:02:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-07-12 16:02:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-07-12 16:02:47.846][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-07-12 16:02:47.847][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-07-12 16:02:47.848][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-07-12 16:02:47.848][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-07-12 16:02:47.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-07-12 16:02:47.850][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-07-12 16:02:47.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-07-12 16:02:47.851][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-07-12 16:02:47.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1264 ]
> 
> proc.time()
   user  system elapsed 
 50.153   2.511  57.669

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)