Back to Long Tests report for BioC 3.22

This page was generated on 2025-09-13 23:55 -0400 (Sat, 13 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4719
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4538
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/29HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-09-13 09:55 -0400 (Sat, 13 Sep 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on lconway

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-09-13 16:01:08 -0400 (Sat, 13 Sep 2025)
EndedAt: 2025-09-13 16:02:31 -0400 (Sat, 13 Sep 2025)
EllapsedTime: 83.5 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-09-13 16:01:43.566][biodb::testContext]
biodb.INFO [2025-09-13 16:01:43.569][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-13 16:01:43.570][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-09-13 16:01:43.571][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-13 16:01:43.572][biodb::testContext]
biodb.INFO [2025-09-13 16:01:43.577][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-09-13 16:01:43.579][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-09-13 16:01:43.585][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-13 16:01:43.586][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-13 16:01:43.587][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-13 16:01:43.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.590][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-13 16:01:43.604][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-13 16:01:43.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.607][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-13 16:01:43.608][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-13 16:01:43.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.612][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-13 16:01:43.612][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-13 16:01:43.613][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-13 16:01:43.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.616][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-13 16:01:43.617][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-13 16:01:43.619][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-13 16:01:43.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.622][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-13 16:01:43.623][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-13 16:01:43.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.626][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-13 16:01:43.627][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-13 16:01:43.627][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-13 16:01:43.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.630][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-13 16:01:43.631][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-13 16:01:43.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.634][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-13 16:01:43.634][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-13 16:01:43.635][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-13 16:01:43.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.638][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-13 16:01:43.639][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-13 16:01:43.640][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-13 16:01:43.640][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-13 16:01:43.641][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-13 16:01:43.642][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-13 16:01:43.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.645][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-13 16:01:43.645][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-13 16:01:43.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.648][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-13 16:01:43.649][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-13 16:01:43.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.652][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-13 16:01:43.653][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-13 16:01:43.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.656][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-13 16:01:43.656][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-13 16:01:43.657][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-13 16:01:43.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.660][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-13 16:01:43.661][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-13 16:01:43.679][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-13 16:01:43.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.682][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-13 16:01:43.683][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-13 16:01:43.683][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-13 16:01:43.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.688][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-13 16:01:43.718][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.730][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-13 16:01:43.731][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.732][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:43.733][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.734][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.734][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.735][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.736][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-13 16:01:43.737][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:43.737][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.738][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-13 16:01:43.739][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:43.740][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.740][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.741][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-13 16:01:43.741][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-13 16:01:43.741][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-13 16:01:43.741][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-13 16:01:43.741][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-13 16:01:43.742][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-13 16:01:43.743][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:43.744][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:43.745][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:43.746][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:43.747][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:43.748][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.748][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.749][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:43.750][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:43.751][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.752][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.753][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-13 16:01:43.754][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.755][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-13 16:01:43.756][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.757][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:43.758][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.758][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.759][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.760][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.761][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-13 16:01:43.762][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:43.763][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.763][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-13 16:01:43.764][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:43.765][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.766][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.767][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-13 16:01:43.767][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-13 16:01:43.767][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-13 16:01:43.767][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-13 16:01:43.767][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-13 16:01:43.767][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-13 16:01:43.768][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:43.769][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:43.770][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:43.770][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:43.771][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:43.772][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.773][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.773][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:43.774][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:43.775][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.776][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.777][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-13 16:01:43.778][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.779][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-13 16:01:43.780][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.780][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:43.781][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.782][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.783][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.784][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.784][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-13 16:01:43.785][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:43.786][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.787][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-13 16:01:43.788][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:43.788][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.789][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.790][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.791][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-13 16:01:43.792][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:43.792][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:43.793][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:43.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:43.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:43.796][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.796][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.797][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:43.798][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:43.799][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.800][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.801][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-13 16:01:43.802][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.803][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-13 16:01:43.804][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.805][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:43.805][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.806][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.807][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.808][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.809][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-13 16:01:43.810][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:43.811][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.812][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-13 16:01:43.813][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:43.815][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.816][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:43.816][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.817][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-13 16:01:43.818][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:43.819][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:43.820][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:43.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:43.821][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:43.822][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:43.823][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.824][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:43.825][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:43.825][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:43.826][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-13 16:01:43.829][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-13 16:01:43.830][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:43.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:43.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:43.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:43.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:43.895][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-13 16:01:43.899][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-13 16:01:43.900][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-13 16:01:43.902][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-13 16:01:43.903][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-13 16:01:43.904][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-13 16:01:43.905][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-13 16:01:43.906][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-13 16:01:43.907][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-13 16:01:43.909][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-13 16:01:43.910][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-13 16:01:43.911][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-13 16:01:43.912][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-13 16:01:43.913][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-13 16:01:43.914][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-13 16:01:43.915][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-13 16:01:43.917][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-13 16:01:43.918][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-13 16:01:43.919][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-13 16:01:43.920][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-13 16:01:43.921][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-13 16:01:43.922][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-13 16:01:43.924][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-13 16:01:43.925][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-13 16:01:43.926][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-13 16:01:43.927][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-13 16:01:43.928][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-13 16:01:43.929][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-13 16:01:43.930][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-13 16:01:43.932][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-13 16:01:43.933][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-13 16:01:43.934][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-13 16:01:43.935][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-13 16:01:43.936][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-13 16:01:43.937][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-13 16:01:43.938][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-13 16:01:43.940][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-13 16:01:43.941][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-13 16:01:43.942][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-13 16:01:43.943][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-13 16:01:43.944][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-13 16:01:43.945][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-13 16:01:43.946][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-13 16:01:43.947][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-13 16:01:43.949][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-13 16:01:43.950][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-13 16:01:43.951][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-13 16:01:43.952][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-13 16:01:43.953][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-13 16:01:43.954][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-13 16:01:43.955][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-13 16:01:43.956][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-13 16:01:43.957][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-13 16:01:43.958][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-13 16:01:43.959][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-13 16:01:43.960][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-13 16:01:43.962][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-13 16:01:43.963][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-13 16:01:43.964][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-13 16:01:43.965][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-13 16:01:43.966][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-13 16:01:43.967][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-13 16:01:43.968][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-13 16:01:43.969][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-13 16:01:43.971][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-13 16:01:43.972][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-13 16:01:43.973][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-13 16:01:43.974][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-13 16:01:43.975][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-13 16:01:43.976][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-13 16:01:43.977][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-13 16:01:43.979][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-13 16:01:43.980][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-13 16:01:43.981][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-13 16:01:43.982][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-13 16:01:43.983][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-13 16:01:43.984][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-13 16:01:43.985][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-13 16:01:43.987][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-13 16:01:43.988][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-13 16:01:43.989][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-13 16:01:43.990][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-13 16:01:43.991][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-13 16:01:43.996][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-13 16:01:43.997][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-09-13 16:01:44.000][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-13 16:01:44.001][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.002][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-13 16:01:44.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:44.096][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-09-13 16:01:44.104][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-09-13 16:01:44.106][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:44.107][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-13 16:01:44.108][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:44.109][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-13 16:01:44.110][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:44.111][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-13 16:01:44.111][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:44.112][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-09-13 16:01:44.113][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-13 16:01:44.114][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-13 16:01:44.115][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:44.116][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-09-13 16:01:44.117][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-09-13 16:01:44.118][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-13 16:01:44.119][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-13 16:01:44.119][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-13 16:01:44.119][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-13 16:01:44.120][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-13 16:01:44.121][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:44.122][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:44.123][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-13 16:01:44.123][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-13 16:01:44.124][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-13 16:01:44.125][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-13 16:01:44.126][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-09-13 16:01:44.126][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-09-13 16:01:44.127][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-13 16:01:44.127][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-13 16:01:44.128][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-13 16:01:44.129][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-09-13 16:01:44.129][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-09-13 16:01:44.134][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-13 16:01:44.136][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-13 16:01:44.137][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-09-13 16:01:44.138][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-13 16:01:44.139][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-13 16:01:44.141][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-13 16:01:44.161][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-09-13 16:01:44.202][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-09-13 16:01:44.210][biodb::testThat]
biodb.INFO [2025-09-13 16:01:44.211][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-09-13 16:01:44.212][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:44.213][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:44.216][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-09-13 16:01:44.218][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:44.220][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:44.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:44.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:44.253][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.256][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.269][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:44.270][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:44.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.272][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.297][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:44.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:44.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.299][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:44.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:44.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.307][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.311][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.312][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.313][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.318][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.319][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.320][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.325][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:44.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.327][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:44.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.332][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.334][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.339][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.341][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:44.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.356][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.363][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:44.427][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-09-13 16:01:44.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:44.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:44.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:44.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.556][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.557][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.559][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.581][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.582][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.583][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:44.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.610][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:44.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:44.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:44.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:44.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.632][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:44.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:44.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.634][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:44.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:44.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.657][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.659][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.681][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.682][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.684][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:44.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:44.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.705][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:44.706][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:44.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.708][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.708][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:44.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:44.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.761][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.764][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.786][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.787][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.810][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.834][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.855][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.857][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.868][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.871][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.876][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:44.877][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:44.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.878][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.887][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:44.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:44.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.889][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:44.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:44.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.896][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:44.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.903][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.907][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:44.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.910][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.914][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:44.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.917][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:44.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.924][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.929][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.930][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.931][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.936][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:44.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:44.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.938][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:44.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:44.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:44.945][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:44.958][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-09-13 16:01:44.985][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:44.986][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:44.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:44.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:44.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:44.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:44.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:44.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:44.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:44.997][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:44.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:44.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.000][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.021][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.022][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.024][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.028][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.030][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.038][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.044][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.049][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.050][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.051][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.056][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:45.057][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.058][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.063][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.065][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.069][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.071][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.076][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:45.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.078][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.079][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:45.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.083][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.084][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.085][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:45.127][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-09-13 16:01:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.162][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.166][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:45.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:45.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:45.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:45.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:45.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.251][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.253][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.276][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.299][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.301][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.322][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.323][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.325][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.336][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:45.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.347][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:45.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.349][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.350][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:45.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.371][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.373][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.398][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.401][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.416][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.422][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.423][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.425][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.447][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.449][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.450][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.460][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.470][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.471][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.473][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.495][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.496][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.497][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.527][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.552][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.563][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.566][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.570][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.572][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.577][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.578][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.579][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.584][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.586][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.593][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.597][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.598][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.600][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.604][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.605][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.607][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.611][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.612][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.614][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.619][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.621][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.626][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.628][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.635][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.640][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-09-13 16:01:45.641][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:45.642][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:45.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:45.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:45.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:45.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:45.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:45.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:45.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:45.660][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.662][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.666][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.667][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.669][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.670][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.673][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.674][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.676][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.682][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.687][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.687][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.689][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.695][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.700][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:45.700][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.702][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.703][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:45.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.709][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.713][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.714][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.715][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:45.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.720][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:45.721][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.722][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:45.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:45.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.727][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.728][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.729][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:45.767][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-09-13 16:01:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:45.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.797][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:45.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:45.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:45.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:45.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:45.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:45.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.878][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.880][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:45.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:45.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.902][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.903][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.904][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:45.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:45.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.933][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:45.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:45.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.956][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.957][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.958][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:45.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.972][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.979][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.980][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.981][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:45.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:45.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.002][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.004][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.028][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.046][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.053][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.054][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.056][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.076][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.078][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.079][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.099][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.101][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.122][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.123][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.124][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.135][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.138][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.142][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.143][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.145][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.149][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.151][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.156][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.157][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.158][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.165][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.171][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.176][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.182][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.189][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.194][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.195][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.196][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.201][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.203][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.208][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:46.209][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:46.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.210][ef$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:46.218][biodb::testThat]
biodb.INFO [2025-09-13 16:01:46.219][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-09-13 16:01:46.219][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:46.220][biodb::testThat]
biodb.DEBUG[2025-09-13 16:01:46.222][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-09-13 16:01:46.235][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-09-13 16:01:46.238][cch$loadContents] Load 3 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:46.253][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-09-13 16:01:46.256][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-09-13 16:01:46.260][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-09-13 16:01:46.261][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:46.262][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-09-13 16:01:46.263][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:46.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:46.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:46.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:46.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:46.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:46.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:46.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:46.275][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.277][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.281][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.282][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.283][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.290][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.294][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.295][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.297][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.303][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.308][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.309][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.310][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.311][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.314][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:46.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.317][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.318][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:46.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.321][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.322][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.324][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.328][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.331][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.335][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:46.336][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.338][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.339][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.346][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:46.347][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:46.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.349][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:46.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:46.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:46.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:46.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:46.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:46.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:46.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:46.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:46.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:46.385][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.387][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.391][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.392][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.394][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.398][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.400][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.407][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.412][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.413][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.414][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.419][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.419][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.421][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.425][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:46.426][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.427][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.431][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.432][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.434][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.438][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.440][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.444][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:46.445][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.446][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.450][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:46.451][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:46.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.453][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:46.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:46.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:46.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:46.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:46.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:46.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:46.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:46.493][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.496][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.500][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.501][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.503][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:46.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:46.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.507][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.509][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.516][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.520][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.523][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.527][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.528][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.529][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:46.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.533][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:46.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.535][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.542][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.546][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.548][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.553][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:46.553][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.555][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.559][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:46.560][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:46.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.561][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:46.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:46.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:46.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:46.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:46.621][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-09-13 16:01:46.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:46.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:46.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:46.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:46.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:46.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:46.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:46.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:46.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:46.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-13 16:01:46.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:46.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-13 16:01:46.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:46.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-13 16:01:46.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:46.666][biodb::testThat]
biodb.INFO [2025-09-13 16:01:46.667][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-09-13 16:01:46.668][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:46.668][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:46.671][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.672][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.673][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:46.675][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-09-13 16:01:46.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:46.715][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-09-13 16:01:46.719][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-09-13 16:01:46.735][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:46.740][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-09-13 16:01:46.741][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-13 16:01:46.757][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:46.780][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:46.783][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:46.784][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:46.786][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-09-13 16:01:46.799][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.800][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:46.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.802][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.802][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.805][ef$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:46.809][biodb::testThat]
biodb.INFO [2025-09-13 16:01:46.810][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-09-13 16:01:46.810][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:46.811][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:46.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:46.889][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:46.892][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:46.894][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:46.895][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-09-13 16:01:46.910][biodb::testThat]
biodb.INFO [2025-09-13 16:01:46.911][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-09-13 16:01:46.912][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:46.913][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:46.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.947][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:46.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.950][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:46.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:46.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:46.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:46.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:46.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:46.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:46.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:46.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:46.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.989][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-13 16:01:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-13 16:01:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-13 16:01:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-13 16:01:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:47.004][biodb::testThat]
biodb.INFO [2025-09-13 16:01:47.005][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-09-13 16:01:47.005][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:47.006][biodb::testThat]
biodb.INFO [2025-09-13 16:01:47.014][biodb::testThat]
biodb.INFO [2025-09-13 16:01:47.015][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-09-13 16:01:47.016][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:47.017][biodb::testThat]
biodb.INFO [2025-09-13 16:01:47.024][biodb::testThat]
biodb.INFO [2025-09-13 16:01:47.025][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-09-13 16:01:47.026][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:47.027][biodb::testThat]
biodb.DEBUG[2025-09-13 16:01:47.030][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-09-13 16:01:47.948][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-09-13 16:01:49.248][biodb::testThat]
biodb.INFO [2025-09-13 16:01:49.249][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-09-13 16:01:49.250][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:49.251][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:49.257][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.260][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.264][ef$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:49.265][biodb::testThat]
biodb.INFO [2025-09-13 16:01:49.266][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-09-13 16:01:49.267][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:49.275][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:49.381][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:49.384][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:49.386][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:49.387][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-13 16:01:49.457][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:49.459][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:49.461][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:49.462][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-09-13 16:01:49.475][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:01:49.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:01:49.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:49.508][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:49.510][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:49.512][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:01:49.513][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.524][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-09-13 16:01:49.558][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:49.559][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:49.562][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-09-13 16:01:49.563][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.564][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:49.565][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:49.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.577][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.579][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.584][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.585][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.586][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.605][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.608][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.615][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.619][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.620][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.621][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.625][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.626][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.628][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.629][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.631][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.638][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.643][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.645][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.650][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.652][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.653][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.659][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.695][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-09-13 16:01:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:49.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:49.720][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:49.722][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:01:49.723][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.763][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-09-13 16:01:49.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:49.765][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:49.768][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-09-13 16:01:49.769][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.770][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:49.771][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:49.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.782][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.784][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.788][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.789][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.791][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.795][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.798][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.802][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.803][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.805][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.810][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.812][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.821][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.822][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:49.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.823][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.824][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.827][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.828][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:49.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.831][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.832][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.834][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.838][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.840][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:49.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:49.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.845][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.846][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.847][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.848][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:49.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:49.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.852][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.853][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.854][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.891][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-09-13 16:01:49.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:49.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:49.922][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:49.924][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:49.925][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:49.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:49.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:49.960][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-09-13 16:01:49.961][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:49.962][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:49.965][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-09-13 16:01:49.965][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:49.966][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:49.967][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:49.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:49.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:49.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:49.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:49.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:49.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:49.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:49.979][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.980][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.982][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:49.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:49.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.986][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:49.987][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:49.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.988][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.989][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:49.990][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:49.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.992][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.993][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:49.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:49.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.995][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:49.996][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.997][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:49.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:49.999][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.000][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.002][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.003][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.005][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.008][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.009][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.010][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.011][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.015][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.018][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.023][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.024][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.064][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-09-13 16:01:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:50.092][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-09-13 16:01:50.092][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.094][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.096][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-09-13 16:01:50.097][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.098][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.099][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.111][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.114][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.118][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.119][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.120][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.121][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.124][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.125][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.126][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.127][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.131][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.132][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.134][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.135][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.136][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.138][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.139][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.141][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.142][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.144][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.149][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.156][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.163][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.197][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-09-13 16:01:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:50.224][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-09-13 16:01:50.225][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.226][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.229][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-09-13 16:01:50.230][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.231][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.232][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.244][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.245][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.246][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.251][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.251][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.253][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.254][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.256][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.260][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.268][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.269][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.272][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.273][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.275][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.276][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.279][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.280][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.282][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.287][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.289][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.291][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.296][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.331][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-09-13 16:01:50.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:50.358][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-09-13 16:01:50.359][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.360][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.364][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-09-13 16:01:50.365][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.366][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.367][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.385][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.386][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.391][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.392][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.393][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.395][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.398][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.401][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.406][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.407][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.408][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.416][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.423][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.428][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.431][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.432][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.438][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.443][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.445][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.450][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.453][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.457][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.458][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.460][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.504][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-09-13 16:01:50.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:50.525][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-09-13 16:01:50.526][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.527][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.530][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-09-13 16:01:50.531][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.533][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.534][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.547][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.547][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.549][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.554][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.557][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.561][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.564][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.569][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.570][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.571][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.576][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.579][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.584][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.585][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.586][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.587][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.591][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.594][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.601][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.606][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.613][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.618][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.619][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.621][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.628][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.669][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-09-13 16:01:50.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:50.691][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-09-13 16:01:50.692][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.693][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.696][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-09-13 16:01:50.697][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.698][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.699][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.715][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.720][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.721][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.722][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.727][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.735][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.739][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.740][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.742][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.749][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.756][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.758][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.760][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.761][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.765][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.766][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.767][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.772][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.775][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.780][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.781][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.782][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.787][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.788][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.789][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.830][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-09-13 16:01:50.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:50.856][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-09-13 16:01:50.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:50.859][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:50.862][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-09-13 16:01:50.863][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:50.864][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:50.865][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:50.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:50.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:50.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:50.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:50.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:50.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:50.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:50.878][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.881][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.888][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.893][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.896][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.897][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:50.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.901][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.903][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:50.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:50.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.911][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:50.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.918][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.919][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.920][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.922][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.923][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.927][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.929][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:50.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.934][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.937][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:50.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.942][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.943][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.944][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.949][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.950][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.952][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:50.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:50.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:50.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:50.997][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-09-13 16:01:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:51.020][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-09-13 16:01:51.021][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:51.022][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:51.025][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-09-13 16:01:51.026][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.027][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:51.028][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:51.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.041][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.044][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.048][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.051][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.056][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.058][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.063][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.064][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.066][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.073][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.078][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.079][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.081][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.082][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.089][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.097][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.101][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.104][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.108][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.111][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.115][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.118][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.158][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-09-13 16:01:51.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:51.182][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-09-13 16:01:51.183][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:51.185][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:51.188][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-09-13 16:01:51.189][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.190][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:51.191][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:51.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.204][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.209][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.211][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.216][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.217][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.219][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.220][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.224][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.226][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.233][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.234][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.242][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.247][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.248][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.249][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.250][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.253][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.258][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.260][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.265][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.268][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.273][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.274][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.275][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.283][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.328][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-09-13 16:01:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:51.350][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-09-13 16:01:51.351][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:51.352][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:51.355][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-09-13 16:01:51.356][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.357][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:51.358][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:51.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.371][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.374][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.379][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.380][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.381][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.386][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.389][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.396][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.403][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.409][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.411][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.412][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.415][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.416][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.422][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.427][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.428][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.430][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.435][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.436][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.437][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.448][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.449][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.490][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-09-13 16:01:51.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:51.511][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-09-13 16:01:51.512][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:51.514][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:51.516][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-09-13 16:01:51.517][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.518][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:51.519][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:51.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.531][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.532][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.533][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.538][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.541][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.542][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.546][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.547][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.549][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.557][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.564][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.566][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.567][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.568][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.569][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.570][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.571][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.573][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.574][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.578][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.580][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.585][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.586][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.587][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.592][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.593][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.595][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.600][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.601][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.602][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.639][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-09-13 16:01:51.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:51.661][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-09-13 16:01:51.662][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:51.663][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:51.666][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-09-13 16:01:51.667][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.668][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:51.669][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:51.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.690][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.695][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.696][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.697][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.703][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.705][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.710][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.711][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.712][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.715][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.716][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.717][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.718][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.720][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.721][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.724][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.731][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.738][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.743][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.744][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.746][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.751][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.752][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.753][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.790][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-09-13 16:01:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:51.815][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-09-13 16:01:51.815][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:51.817][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:51.820][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-09-13 16:01:51.821][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.822][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:51.823][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:51.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.837][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.842][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.842][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.844][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.848][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.851][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.857][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:51.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:51.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.862][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.863][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.864][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.868][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.869][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:51.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.871][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.872][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.874][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.881][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:51.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.886][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.888][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:51.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:51.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.893][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.893][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.895][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.896][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:51.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.899][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.905][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.907][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:51.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.947][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-09-13 16:01:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:51.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:51.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:51.968][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-09-13 16:01:51.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:51.970][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:51.974][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-09-13 16:01:51.975][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:51.976][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:51.977][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:51.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:51.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:51.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:51.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:51.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:51.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:51.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:51.989][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.991][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:51.996][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:51.997][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:51.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:51.999][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.003][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.004][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.006][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.011][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.012][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.013][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.029][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.034][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.035][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.037][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.038][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.041][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.045][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.046][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.048][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.053][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.055][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.060][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.061][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.062][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.069][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.109][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-09-13 16:01:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:52.131][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-09-13 16:01:52.132][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:52.133][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:52.136][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-09-13 16:01:52.142][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:52.143][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:52.144][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:52.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.160][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.165][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.166][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.167][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.172][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.175][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.180][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.182][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.187][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.188][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.189][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.194][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.195][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.196][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.198][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.198][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.200][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.205][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.207][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.212][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.213][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.215][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.219][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.220][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.222][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.229][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.275][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-09-13 16:01:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:52.297][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-09-13 16:01:52.298][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:52.299][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:52.303][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-09-13 16:01:52.303][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:52.305][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:52.306][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:52.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.318][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.321][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.325][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.326][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.328][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.333][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.334][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.335][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.342][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.350][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.355][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.356][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.357][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.358][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.361][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.369][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.378][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.381][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.386][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.389][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.394][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.395][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.397][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.438][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-09-13 16:01:52.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:52.458][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-09-13 16:01:52.459][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:52.460][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:52.464][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-09-13 16:01:52.465][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:52.466][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:52.467][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:52.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.480][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.482][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.487][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.490][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.491][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.500][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.503][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.510][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.518][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.523][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.525][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.526][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.529][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.530][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.536][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.541][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.544][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.548][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.551][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.552][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.556][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.557][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.558][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.598][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-09-13 16:01:52.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:52.625][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-09-13 16:01:52.626][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:52.628][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:52.630][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-09-13 16:01:52.631][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:52.632][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:52.633][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:52.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.646][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.649][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.654][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.656][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.661][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.664][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.671][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.679][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.684][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.687][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.688][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.691][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.698][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.706][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.711][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.712][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.713][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.719][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.720][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.767][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-09-13 16:01:52.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:52.789][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-09-13 16:01:52.790][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:52.791][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:52.794][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-09-13 16:01:52.795][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:52.796][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:52.797][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:52.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.810][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.813][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.818][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.819][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.820][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.821][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:52.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:52.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.825][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.826][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.828][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.835][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:52.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:52.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.843][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:52.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.848][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.849][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:52.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.855][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.856][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.859][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:52.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.866][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.871][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.873][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.878][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.880][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.887][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:52.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:52.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.903][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:52.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.928][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-09-13 16:01:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:52.959][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:52.962][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:52.965][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:52.965][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:52.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:52.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:52.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:52.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:52.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:52.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:52.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:52.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:52.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:52.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:52.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:53.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:53.509][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:53.511][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-09-13 16:01:53.512][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-13 16:01:53.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:53.517][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:53.519][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-09-13 16:01:53.520][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:53.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:53.531][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-09-13 16:01:53.532][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:53.533][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:53.537][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-09-13 16:01:53.537][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:53.538][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:53.539][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:53.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.551][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.553][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.558][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:53.558][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:53.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.560][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:53.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:53.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.565][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:53.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:53.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.567][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:53.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:53.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:53.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:53.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.575][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:53.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.582][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:53.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:53.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:53.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:53.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.595][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:53.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:53.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.600][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:53.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.602][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.603][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.607][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.608][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.610][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.614][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:53.615][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:53.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.617][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:53.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.622][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:53.623][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:53.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.625][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:53.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:53.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:53.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.632][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:53.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:53.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.673][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-09-13 16:01:53.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-13 16:01:53.718][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-09-13 16:01:53.719][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-13 16:01:53.721][cch$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-13 16:01:53.724][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-09-13 16:01:53.725][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-13 16:01:53.726][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-13 16:01:53.727][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-13 16:01:53.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.740][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.743][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.748][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:53.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:53.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.750][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:01:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:01:53.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.755][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:53.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:53.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.758][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:01:53.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:01:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:53.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:53.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.765][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:01:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:01:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:53.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:53.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.773][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:01:53.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:01:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:53.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:01:53.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.780][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.781][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:53.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.784][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-13 16:01:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.791][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.796][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:53.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:53.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.799][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:01:53.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:01:53.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.804][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:53.805][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:53.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.806][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-13 16:01:53.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:01:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.811][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:53.812][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:53.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.814][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:01:53.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:01:53.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:53.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:01:53.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:01:53.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.861][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-09-13 16:01:53.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:53.896][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:53.899][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:53.902][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:53.903][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:53.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:53.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:53.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:53.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:53.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:53.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:53.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:53.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:54.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:54.416][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:54.418][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-13 16:01:54.419][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:54.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:54.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:54.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:54.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:54.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:54.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:54.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:54.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:54.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:54.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:55.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:55.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:55.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:01:55.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-09-13 16:01:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-09-13 16:01:55.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-13 16:01:55.107][biodb::testThat]
biodb.INFO [2025-09-13 16:01:55.108][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-09-13 16:01:55.109][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:01:55.109][biodb::testThat]
biodb.TRACE[2025-09-13 16:01:55.112][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:01:55.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:01:55.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:01:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:01:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:01:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:01:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:55.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:01:55.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:55.179][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:55.181][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:01:55.181][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:55.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:01:55.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:55.207][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:01:55.209][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:01:55.210][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:01:55.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:55.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:01:55.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:01:55.254][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-13 16:01:55.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:55.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.273][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.274][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:01:55.275][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:01:55.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:01:55.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.280][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.283][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.284][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.285][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.286][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.287][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.289][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.289][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:01:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-13 16:01:55.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.327][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.328][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:01:55.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:01:55.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:01:55.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.332][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.334][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.338][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.338][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.339][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.343][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.344][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:01:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.360][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-13 16:01:55.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:01:55.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.378][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.379][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:01:55.380][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:01:55.380][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:01:55.381][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.382][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.383][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.385][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.388][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.390][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:01:55.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.393][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.394][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:01:55.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:01:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:01:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:01:55.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-13 16:01:55.406][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-13 16:01:55.407][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-13 16:01:55.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:01:55.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:01:55.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:01:55.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:01:55.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:01:55.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:01:55.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:01:55.419][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:01:55.421][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2025-09-13 16:01:55.422][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:55.423][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:55.424][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:55.755][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:55.756][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:55.757][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:55.759][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:56.366][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:56.367][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:56.368][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:56.370][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:56.703][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:56.704][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:56.705][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:56.707][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:57.036][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:57.037][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:57.038][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:57.040][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:57.370][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:57.371][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:57.373][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:57.374][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:57.706][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:57.707][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:57.708][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:57.709][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:58.037][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:58.038][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:58.039][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:58.040][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:58.368][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:58.369][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:58.370][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:58.371][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:58.700][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:58.701][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:58.703][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:58.704][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:59.032][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:59.033][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:59.034][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:59.036][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:01:59.365][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:01:59.366][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:01:59.367][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:01:59.369][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:01:59.702][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:01:59.704][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:01:59.705][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:01:59.708][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:00.038][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:00.039][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:00.040][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:00.042][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:00.373][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:00.374][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:00.375][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:00.377][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:00.706][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:00.707][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:00.708][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:00.710][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:01.041][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:01.042][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:01.043][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:01.044][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:01.375][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:01.376][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:01.377][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:01.378][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:01.709][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:01.725][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:01.728][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:01.737][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:02.068][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:02.070][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:02.072][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:02.075][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:02.404][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-13 16:02:02.418][biodb::testThat]
biodb.INFO [2025-09-13 16:02:02.419][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-09-13 16:02:02.420][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:02:02.421][biodb::testThat]
biodb.TRACE[2025-09-13 16:02:02.423][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:02.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:02.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.427][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:02.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:02.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.431][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:02.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:02.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:02.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:02.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:02.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:02.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:02.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:02.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:02.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:02.547][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:02.549][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:02:02.550][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:02:02.551][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:02.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:02.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:02.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:02.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:02.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:02.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:02.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:02.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:02:02.574][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:02.576][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:02:02.577][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:02:02.578][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:02.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:02.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:02.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:02.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:02.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:02.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:02.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:02.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:02.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:02.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:02.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:02.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:02.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:02.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:02.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:02.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:02.638][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-13 16:02:02.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:02.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:02.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:02.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:02.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:02.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:02.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:02.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.703][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:02.703][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:02.704][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:02.705][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.709][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.712][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.722][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.727][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.728][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:02.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-13 16:02:02.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:02.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:02.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:02.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:02.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:02.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:02.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:02.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.770][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:02.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:02.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:02.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.780][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.785][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.787][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.793][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.794][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-13 16:02:02.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:02.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:02.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:02.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:02.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:02.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:02.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.834][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:02.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:02.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:02.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.842][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.846][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.848][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:02.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.851][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.852][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:02.864][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-13 16:02:02.865][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-13 16:02:02.866][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-13 16:02:02.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:02.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:02.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:02.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:02.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:02.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:02.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:02.878][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:02.881][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2025-09-13 16:02:02.894][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:02.895][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:02.897][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:03.226][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:03.227][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:03.229][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:03.230][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:03.562][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:03.564][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:03.564][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:03.566][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:03.895][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:03.896][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:03.897][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:03.899][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:04.229][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:04.230][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:04.231][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:04.233][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:04.561][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:04.562][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:04.564][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:04.565][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:04.894][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:04.895][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:04.896][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:04.897][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:05.226][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:05.227][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:05.228][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:05.230][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:05.560][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:05.561][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:05.562][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:05.564][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:05.894][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:05.895][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:05.896][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:05.898][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:06.226][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:06.227][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:06.228][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:06.230][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:06.558][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:06.559][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:06.560][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:06.562][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:06.893][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:06.894][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:06.895][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:06.896][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:07.228][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:07.229][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:07.231][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:07.232][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:07.563][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:07.564][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:07.565][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:07.567][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:07.898][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:07.900][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:07.902][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:07.904][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:08.234][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:08.235][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:08.236][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:08.237][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:08.565][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:08.566][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:08.568][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:08.569][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:08.899][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:08.900][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:08.901][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:08.902][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:09.233][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:09.234][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:09.235][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:09.236][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:09.565][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-13 16:02:09.588][biodb::testThat]
biodb.INFO [2025-09-13 16:02:09.589][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-09-13 16:02:09.591][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:02:09.592][biodb::testThat]
biodb.TRACE[2025-09-13 16:02:09.596][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.599][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.603][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:09.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:09.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:09.681][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:09.684][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:02:09.685][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:02:09.686][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:09.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:02:09.709][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:09.712][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:02:09.713][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:02:09.714][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:09.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:09.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:09.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:09.758][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-13 16:02:09.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.777][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.778][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:09.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:09.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:09.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.781][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.784][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.787][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.789][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.791][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.793][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.793][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:09.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.805][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-13 16:02:09.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.827][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:09.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:09.829][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:09.830][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.833][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.837][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.839][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.842][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.843][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:09.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-13 16:02:09.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:09.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.873][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:09.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:09.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:09.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.879][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.883][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.885][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-13 16:02:09.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.888][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.889][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-13 16:02:09.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:09.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:09.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:09.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-13 16:02:09.906][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-13 16:02:09.907][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-13 16:02:09.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:09.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:09.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:09.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:09.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:09.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:09.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:09.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:09.923][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2025-09-13 16:02:09.924][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:09.925][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:09.926][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:10.255][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:10.256][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:10.258][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:10.259][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:10.589][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:10.590][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:10.591][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:10.592][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:10.927][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:10.928][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:10.929][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:10.930][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:11.258][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:11.259][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:11.260][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:11.262][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:11.592][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:11.593][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:11.594][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:11.595][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:11.924][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:11.925][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:11.926][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:11.928][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:12.256][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:12.257][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:12.259][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:12.260][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:12.593][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:12.595][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:12.595][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:12.597][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:12.925][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:12.926][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:12.927][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:12.928][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:13.257][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:13.258][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:13.259][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:13.260][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:13.588][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:13.589][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:13.590][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:13.591][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:13.919][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:13.920][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:13.921][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:13.922][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:14.250][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:14.251][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:14.253][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:14.254][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:14.580][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:14.581][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:14.582][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:14.583][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:14.911][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:14.911][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:14.913][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:14.914][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:15.242][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:15.243][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:15.244][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:15.245][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:15.575][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:15.576][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:15.578][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:15.579][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:15.906][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:15.907][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:15.908][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:15.909][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:16.241][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:16.242][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:16.243][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:16.244][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:16.572][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.TRACE[2025-09-13 16:02:16.583][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:16.584][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:16.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.586][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.587][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:16.588][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:16.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.589][ef$get] fields variable is a list.
biodb.INFO [2025-09-13 16:02:16.591][biodb::testThat]
biodb.INFO [2025-09-13 16:02:16.591][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-09-13 16:02:16.592][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:02:16.593][biodb::testThat]
biodb.TRACE[2025-09-13 16:02:16.596][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:16.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:16.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:16.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:16.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:16.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:16.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:16.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:16.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:16.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:16.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:16.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:16.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:16.655][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:16.657][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2025-09-13 16:02:16.658][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:16.659][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:16.660][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:16.988][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:16.988][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:16.990][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:16.991][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:17.318][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:17.320][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:17.320][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:17.322][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:17.654][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:17.655][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:17.656][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:17.658][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:17.991][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:17.992][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:17.993][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:17.994][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:18.323][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:18.325][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:18.328][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:18.331][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:18.662][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:18.663][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:18.664][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:18.665][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:18.993][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:18.994][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:18.995][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:18.996][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:19.327][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:19.328][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:19.328][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:19.330][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:19.658][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:19.659][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:19.661][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:19.662][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:19.991][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:19.992][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:19.993][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:19.995][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:20.325][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:20.326][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:20.328][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:20.329][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:20.684][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:20.686][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:20.687][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:20.689][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:21.019][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:21.020][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:21.021][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:21.022][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:21.351][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:21.352][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:21.353][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:21.354][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:21.682][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:21.683][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:21.684][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:21.686][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:22.015][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:22.016][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:22.017][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:22.018][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:22.347][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:22.348][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:22.349][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:22.350][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:22.681][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:22.682][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:22.683][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:22.684][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:23.013][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:23.014][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:23.016][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:23.017][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:23.344][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-13 16:02:23.355][biodb::testThat]
biodb.INFO [2025-09-13 16:02:23.356][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-09-13 16:02:23.357][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-13 16:02:23.358][biodb::testThat]
biodb.TRACE[2025-09-13 16:02:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:23.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:23.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:23.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.367][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-13 16:02:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-13 16:02:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:23.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:23.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:23.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:23.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:23.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:23.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:23.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:23.419][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:23.421][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:02:23.423][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-13 16:02:23.424][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:23.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:23.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:23.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:23.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:23.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:23.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:23.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:23.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-13 16:02:23.446][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:23.448][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
fscache.DEBUG[2025-09-13 16:02:23.449][FUN] Found encoding ISO-8859-1 for file /Users/biocbuild/Library/Caches/org.R-project.R/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-13 16:02:23.450][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-13 16:02:23.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:23.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:23.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:23.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:23.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:23.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:23.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:23.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:23.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:23.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:23.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:23.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:23.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:23.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:23.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:23.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-13 16:02:23.491][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-13 16:02:23.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:23.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:23.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:23.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:23.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:23.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:23.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:23.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.508][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.540][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.543][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.572][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.588][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:23.589][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:23.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:23.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:23.591][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:23.592][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.594][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.595][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.597][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.601][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.602][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.604][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.606][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.607][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.610][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.611][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.612][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.613][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.614][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.615][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.616][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.619][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.620][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.621][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.622][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.623][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.625][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.628][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.629][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.630][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.631][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.632][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.633][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.634][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.637][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.638][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.640][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.643][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.646][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.648][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.649][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.650][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.652][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.653][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.655][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.656][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.656][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.658][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.659][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.661][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.662][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.662][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.664][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.665][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-13 16:02:23.665][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-13 16:02:23.666][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.669][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.669][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.670][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.672][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.675][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.676][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.677][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.678][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.682][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.683][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.685][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.686][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.689][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.689][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.690][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.692][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.693][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.694][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.696][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.697][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.699][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.700][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.701][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.703][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.704][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-09-13 16:02:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.781][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.785][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.788][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-09-13 16:02:23.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:23.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:23.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:23.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:23.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:23.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:23.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:23.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.837][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.839][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.869][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.904][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:23.905][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:23.905][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:23.906][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:23.907][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:23.908][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.910][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.911][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.912][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.913][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.917][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.917][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.918][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.920][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.923][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.926][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.927][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.928][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.929][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.930][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.931][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.932][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.936][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.936][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.939][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.939][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.942][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.942][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.945][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.946][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.948][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.949][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.950][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.951][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.954][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.955][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.957][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.958][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.960][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.961][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:23.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.963][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.964][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.965][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:23.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.966][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.967][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.967][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:23.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.969][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:23.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.972][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.973][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:23.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.975][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.976][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:23.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:23.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.978][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:23.980][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:23.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.982][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.983][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:23.983][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:23.984][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:23.985][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:23.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.987][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.987][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:23.988][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:23.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.990][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:23.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.993][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.994][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:23.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:23.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:23.996][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:23.997][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:23.998][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:23.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.000][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.003][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.004][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.005][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.006][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.007][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.009][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.012][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.013][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.014][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.015][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.016][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.017][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.018][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.019][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.022][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.022][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-09-13 16:02:24.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.037][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.040][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.084][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.087][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-09-13 16:02:24.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:24.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:24.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:24.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:24.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:24.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:24.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-13 16:02:24.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.162][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.194][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.197][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.215][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.230][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:24.231][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-13 16:02:24.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-13 16:02:24.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-13 16:02:24.233][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-13 16:02:24.234][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.237][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.237][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.238][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.240][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.243][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.244][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.246][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.249][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.252][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.252][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.253][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.255][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.255][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.258][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.258][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.265][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.265][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.266][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.268][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.268][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.270][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.271][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.272][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.273][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.274][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.276][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.277][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.279][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.280][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.282][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.283][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.285][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.285][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.286][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.287][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.288][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.291][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.291][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-13 16:02:24.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.293][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.294][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.296][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.299][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.300][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.302][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.303][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.305][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.305][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.306][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.307][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.308][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-13 16:02:24.309][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-13 16:02:24.310][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.312][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.315][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.318][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.321][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.321][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.322][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.323][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.326][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.327][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.329][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.330][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.331][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.332][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.333][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.334][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.335][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.338][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.339][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.341][ef$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.342][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-09-13 16:02:24.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-13 16:02:24.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-13 16:02:24.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.355][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-13 16:02:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-13 16:02:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-13 16:02:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-13 16:02:24.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-13 16:02:24.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-13 16:02:24.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-13 16:02:24.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-13 16:02:24.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-13 16:02:24.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-13 16:02:24.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.418][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-13 16:02:24.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-13 16:02:24.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-13 16:02:24.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-13 16:02:24.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-13 16:02:24.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-13 16:02:24.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-13 16:02:24.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-09-13 16:02:24.452][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-13 16:02:24.453][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-13 16:02:24.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-13 16:02:24.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:24.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:24.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:24.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:24.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:24.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-13 16:02:24.466][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-13 16:02:24.468][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2025-09-13 16:02:24.468][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:24.469][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:24.471][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:24.800][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:24.801][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:24.803][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:24.804][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:25.133][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:25.134][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:25.135][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:25.136][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:25.465][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:25.466][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:25.467][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:25.468][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:25.796][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:25.797][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:25.802][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:25.806][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:26.136][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:26.137][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:26.138][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:26.139][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:26.468][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:26.469][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:26.470][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:26.471][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:26.801][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:26.802][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:26.803][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:26.805][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:27.131][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:27.132][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:27.132][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:27.134][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:27.461][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:27.462][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:27.463][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:27.465][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:27.793][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:27.794][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:27.795][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:27.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:28.128][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:28.129][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:28.130][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:28.132][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:28.459][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:28.460][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:28.460][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:28.462][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:28.789][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:28.790][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:28.791][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:28.793][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:29.120][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:29.121][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:29.122][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:29.123][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:29.451][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:29.452][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:29.453][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:29.454][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:29.782][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:29.783][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:29.784][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:29.785][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:30.113][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:30.114][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:30.115][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:30.117][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:30.443][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-13 16:02:30.444][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-13 16:02:30.445][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-13 16:02:30.446][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-13 16:02:30.774][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-13 16:02:30.775][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-13 16:02:30.776][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-13 16:02:30.777][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-13 16:02:31.105][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-13 16:02:31.116][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-09-13 16:02:31.117][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-09-13 16:02:31.118][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-13 16:02:31.118][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-13 16:02:31.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-13 16:02:31.120][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-13 16:02:31.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-13 16:02:31.121][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-13 16:02:31.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)

[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 Patched (2025-09-10 r88807)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
  Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─conn$annotateMzValues(...)
   4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
   5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
   6.         └─private$searchByMass(...)
   7.           └─self$wsGetLiteEntity(...)
   8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
  
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)