Back to Long Tests report for BioC 3.22

This page was generated on 2025-07-12 23:55 -0400 (Sat, 12 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4783
palomino8Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4520
lconwaymacOS 12.7.1 Montereyx86_644.5.1 (2025-06-13) -- "Great Square Root" 4564
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 14/29HostnameOS / ArchCHECK
crisprScore 1.13.1  (landing page)
Jean-Philippe Fortin
Snapshot Date: 2025-07-12 09:55 -0400 (Sat, 12 Jul 2025)
git_url: https://git.bioconductor.org/packages/crisprScore
git_branch: devel
git_last_commit: 0e5cd77
git_last_commit_date: 2025-07-09 14:10:44 -0400 (Wed, 09 Jul 2025)
nebbiolo2Linux (Ubuntu 24.04.2 LTS) / x86_64  ERROR  
palomino8Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR  

CHECK results for crisprScore on lconway

To the developers/maintainers of the crisprScore package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: crisprScore
Version: 1.13.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no crisprScore_1.13.1.tar.gz
StartedAt: 2025-07-12 16:02:15 -0400 (Sat, 12 Jul 2025)
EndedAt: 2025-07-12 16:08:34 -0400 (Sat, 12 Jul 2025)
EllapsedTime: 379.3 seconds
RetCode: 1
Status:   ERROR  
CheckDir: crisprScore.Rcheck
Warnings: NA

Tests output

crisprScore.Rcheck/tests/testthat.Rout.fail


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(crisprScore)
Loading required package: crisprScoreData
Loading required package: ExperimentHub
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: AnnotationHub
Loading required package: BiocFileCache
Loading required package: dbplyr
> 
> test_check("crisprScore")
Error: No available formula with the name "openssl@1.0". Did you mean openssl@3.0, openssl@1.1 or openssl@3?
python-build: use openssl from homebrew
python-build: use readline from homebrew
Downloading Python-2.7.18.tar.xz...
-> https://www.python.org/ftp/python/2.7.18/Python-2.7.18.tar.xz
Installing Python-2.7.18...
patching file configure
patching file configure.ac
patching file setup.py
patching file Mac/Tools/pythonw.c
patching file setup.py
patching file Doc/library/ctypes.rst
patching file Lib/test/test_str.py
patching file Lib/test/test_unicode.py
patching file Modules/_ctypes/_ctypes.c
patching file Modules/_ctypes/callproc.c
patching file Modules/_ctypes/ctypes.h
patching file Modules/_ctypes/callproc.c
patching file setup.py
patching file Mac/Modules/qt/setup.py
patching file setup.py
python-build: use readline from homebrew
python-build: use ncurses from homebrew
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.4-1-g945f4b2)

Inspect or clean up the working tree at /tmp/python-build.20250712160400.539
Results logged to /tmp/python-build.20250712160400.539.log

Last 10 log lines:
		exit 1 ; \
	fi
dyld[9910]: Library not loaded: '/System/Library/Frameworks/Python.framework/Versions/2.7/Python'
  Referenced from: '/private/tmp/python-build.20250712160400.539/Python-2.7.18/python.exe'
  Reason: tried: '/System/Library/Frameworks/Python.framework/Versions/2.7/Python' (no such file), '/Library/Frameworks/Python.framework/Versions/2.7/Python' (no such file)
/bin/sh: line 1:  9910 Abort trap: 6           DYLD_LIBRARY_PATH=/tmp/python-build.20250712160400.539/Python-2.7.18 ./python.exe -E -S -m sysconfig --generate-posix-vars
generate-posix-vars failed
make[2]: *** [pybuilddir.txt] Error 1
make[1]: *** [build_all_generate_profile] Error 2
make: *** [profile-opt] Error 2
Error: No available formula with the name "openssl@1.0". Did you mean openssl@3.0, openssl@1.1 or openssl@3?
python-build: use openssl from homebrew
python-build: use readline from homebrew
Downloading Python-2.7.18.tar.xz...
-> https://www.python.org/ftp/python/2.7.18/Python-2.7.18.tar.xz
Installing Python-2.7.18...
patching file configure
patching file configure.ac
patching file setup.py
patching file Mac/Tools/pythonw.c
patching file setup.py
patching file Doc/library/ctypes.rst
patching file Lib/test/test_str.py
patching file Lib/test/test_unicode.py
patching file Modules/_ctypes/_ctypes.c
patching file Modules/_ctypes/callproc.c
patching file Modules/_ctypes/ctypes.h
patching file Modules/_ctypes/callproc.c
patching file setup.py
patching file Mac/Modules/qt/setup.py
patching file setup.py
python-build: use readline from homebrew
python-build: use ncurses from homebrew
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.4-1-g945f4b2)

Inspect or clean up the working tree at /tmp/python-build.20250712160555.11233
Results logged to /tmp/python-build.20250712160555.11233.log

Last 10 log lines:
		exit 1 ; \
	fi
dyld[19786]: Library not loaded: '/System/Library/Frameworks/Python.framework/Versions/2.7/Python'
  Referenced from: '/private/tmp/python-build.20250712160555.11233/Python-2.7.18/python.exe'
  Reason: tried: '/System/Library/Frameworks/Python.framework/Versions/2.7/Python' (no such file), '/Library/Frameworks/Python.framework/Versions/2.7/Python' (no such file)
/bin/sh: line 1: 19786 Abort trap: 6           DYLD_LIBRARY_PATH=/tmp/python-build.20250712160555.11233/Python-2.7.18 ./python.exe -E -S -m sysconfig --generate-posix-vars
generate-posix-vars failed
make[2]: *** [pybuilddir.txt] Error 1
make[1]: *** [build_all_generate_profile] Error 2
make: *** [profile-opt] Error 2
python-build: use openssl from homebrew
python-build: use readline from homebrew
Downloading Python-3.6.15.tar.xz...
-> https://www.python.org/ftp/python/3.6.15/Python-3.6.15.tar.xz
Installing Python-3.6.15...
patching file configure
patching file configure.ac
patching file Misc/NEWS.d/next/macOS/2019-06-03-05-49-49.bpo-36231.RfmW_p.rst
patching file setup.py
patching file setup.py
patching file Doc/library/ctypes.rst
patching file Lib/test/test_unicode.py
patching file Modules/_ctypes/_ctypes.c
patching file Modules/_ctypes/callproc.c
patching file Modules/_ctypes/ctypes.h
patching file setup.py
patching file Misc/NEWS.d/next/macOS/2020-06-24-13-51-57.bpo-41100.mcHdc5.rst
patching file configure
patching file configure.ac
patching file 'Misc/NEWS.d/next/Core and Builtins/2020-06-30-04-44-29.bpo-41100.PJwA6F.rst'
patching file Modules/_decimal/libmpdec/mpdecimal.h
patching file setup.py
patching file Misc/NEWS.d/next/Build/2021-10-11-16-27-38.bpo-45405.iSfdW5.rst
patching file configure
patching file configure.ac
patching file 'Misc/NEWS.d/next/Core and Builtins/2019-04-16-11-52-21.bpo-27987.n2_DcQ.rst'
patching file Objects/obmalloc.c
patching file Include/objimpl.h
patching file 'Misc/NEWS.d/next/Core and Builtins/2019-05-15-18-28-43.bpo-27987.FaxuLy.rst'
patching file Misc/NEWS.d/next/Library/2019-02-25-13-21-43.bpo-36106.VuhEiQ.rst
patching file Modules/mathmodule.c
Hunk #1 succeeded at 67 with fuzz 1 (offset -33 lines).
Hunk #2 succeeded at 296 (offset -32 lines).
Hunk #3 succeeded at 320 (offset -32 lines).
Hunk #4 succeeded at 390 (offset -33 lines).
python-build: use readline from homebrew
python-build: use ncurses from homebrew
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.4-1-g945f4b2)

Inspect or clean up the working tree at /tmp/python-build.20250712160746.21121
Results logged to /tmp/python-build.20250712160746.21121.log

Last 10 log lines:
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for --with-pydebug... no
checking for --with-assertions... no
checking for --enable-optimizations... yes
checking for --with-lto... yes
checking target system type... x86_64-apple-darwin21.6.0
checking for -llvm-ar... no
checking for llvm-ar... ''
configure: error: llvm-ar is required for a --with-lto build with clang but could not be found.
make: *** No targets specified and no makefile found.  Stop.
python-build: use openssl from homebrew
python-build: use readline from homebrew
Downloading Python-3.6.15.tar.xz...
-> https://www.python.org/ftp/python/3.6.15/Python-3.6.15.tar.xz
Installing Python-3.6.15...
patching file configure
patching file configure.ac
patching file Misc/NEWS.d/next/macOS/2019-06-03-05-49-49.bpo-36231.RfmW_p.rst
patching file setup.py
patching file setup.py
patching file Doc/library/ctypes.rst
patching file Lib/test/test_unicode.py
patching file Modules/_ctypes/_ctypes.c
patching file Modules/_ctypes/callproc.c
patching file Modules/_ctypes/ctypes.h
patching file setup.py
patching file Misc/NEWS.d/next/macOS/2020-06-24-13-51-57.bpo-41100.mcHdc5.rst
patching file configure
patching file configure.ac
patching file 'Misc/NEWS.d/next/Core and Builtins/2020-06-30-04-44-29.bpo-41100.PJwA6F.rst'
patching file Modules/_decimal/libmpdec/mpdecimal.h
patching file setup.py
patching file Misc/NEWS.d/next/Build/2021-10-11-16-27-38.bpo-45405.iSfdW5.rst
patching file configure
patching file configure.ac
patching file 'Misc/NEWS.d/next/Core and Builtins/2019-04-16-11-52-21.bpo-27987.n2_DcQ.rst'
patching file Objects/obmalloc.c
patching file Include/objimpl.h
patching file 'Misc/NEWS.d/next/Core and Builtins/2019-05-15-18-28-43.bpo-27987.FaxuLy.rst'
patching file Misc/NEWS.d/next/Library/2019-02-25-13-21-43.bpo-36106.VuhEiQ.rst
patching file Modules/mathmodule.c
Hunk #1 succeeded at 67 with fuzz 1 (offset -33 lines).
Hunk #2 succeeded at 296 (offset -32 lines).
Hunk #3 succeeded at 320 (offset -32 lines).
Hunk #4 succeeded at 390 (offset -33 lines).
python-build: use readline from homebrew
python-build: use ncurses from homebrew
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.4-1-g945f4b2)

Inspect or clean up the working tree at /tmp/python-build.20250712160803.23259
Results logged to /tmp/python-build.20250712160803.23259.log

Last 10 log lines:
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for --with-pydebug... no
checking for --with-assertions... no
checking for --enable-optimizations... yes
checking for --with-lto... yes
checking target system type... x86_64-apple-darwin21.6.0
checking for -llvm-ar... no
checking for llvm-ar... ''
configure: error: llvm-ar is required for a --with-lto build with clang but could not be found.
make: *** No targets specified and no makefile found.  Stop.

python-build: use openssl from homebrew
python-build: use readline from homebrew
Downloading Python-3.6.15.tar.xz...
-> https://www.python.org/ftp/python/3.6.15/Python-3.6.15.tar.xz
Installing Python-3.6.15...
patching file configure
patching file configure.ac
patching file Misc/NEWS.d/next/macOS/2019-06-03-05-49-49.bpo-36231.RfmW_p.rst
patching file setup.py
patching file setup.py
patching file Doc/library/ctypes.rst
patching file Lib/test/test_unicode.py
patching file Modules/_ctypes/_ctypes.c
patching file Modules/_ctypes/callproc.c
patching file Modules/_ctypes/ctypes.h
patching file setup.py
patching file Misc/NEWS.d/next/macOS/2020-06-24-13-51-57.bpo-41100.mcHdc5.rst
patching file configure
patching file configure.ac
patching file 'Misc/NEWS.d/next/Core and Builtins/2020-06-30-04-44-29.bpo-41100.PJwA6F.rst'
patching file Modules/_decimal/libmpdec/mpdecimal.h
patching file setup.py
patching file Misc/NEWS.d/next/Build/2021-10-11-16-27-38.bpo-45405.iSfdW5.rst
patching file configure
patching file configure.ac
patching file 'Misc/NEWS.d/next/Core and Builtins/2019-04-16-11-52-21.bpo-27987.n2_DcQ.rst'
patching file Objects/obmalloc.c
patching file Include/objimpl.h
patching file 'Misc/NEWS.d/next/Core and Builtins/2019-05-15-18-28-43.bpo-27987.FaxuLy.rst'
patching file Misc/NEWS.d/next/Library/2019-02-25-13-21-43.bpo-36106.VuhEiQ.rst
patching file Modules/mathmodule.c
Hunk #1 succeeded at 67 with fuzz 1 (offset -33 lines).
Hunk #2 succeeded at 296 (offset -32 lines).
Hunk #3 succeeded at 320 (offset -32 lines).
Hunk #4 succeeded at 390 (offset -33 lines).
python-build: use readline from homebrew
python-build: use ncurses from homebrew
python-build: use zlib from xcode sdk

BUILD FAILED (OS X 12.7.6 using python-build 2.6.4-1-g945f4b2)

Inspect or clean up the working tree at /tmp/python-build.20250712160824.25415
Results logged to /tmp/python-build.20250712160824.25415.log

Last 10 log lines:
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking for --with-pydebug... no
checking for --with-assertions... no
checking for --enable-optimizations... yes
checking for --with-lto... yes
checking target system type... x86_64-apple-darwin21.6.0
checking for -llvm-ar... no
checking for llvm-ar... ''
configure: error: llvm-ar is required for a --with-lto build with clang but could not be found.
make: *** No targets specified and no makefile found.  Stop.
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 0 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-ontargets.R:19:5'): Azimuth scores ─────────────────────────────
Error: installation of Python 2.7 failed
Backtrace:
     ▆
  1. ├─testthat::expect_equal(...) at test-ontargets.R:19:5
  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
  4. └─crisprScore::getAzimuthScores(azimuth_sequences)
  5.   └─basilisk::obtainEnvironmentPath(env_azimuth)
  6.     └─basilisk::setupBasiliskEnv(...)
  7.       ├─base::suppressMessages(install_python(version))
  8.       │ └─base::withCallingHandlers(...)
  9.       └─reticulate::install_python(version)
 10.         └─reticulate:::stopf("installation of Python %s failed", version)
── Error ('test-ontargets.R:24:5'): DeepCpf1 scores ────────────────────────────
Error: installation of Python 2.7 failed
Backtrace:
     ▆
  1. ├─testthat::expect_equal(...) at test-ontargets.R:24:5
  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
  4. └─crisprScore::getDeepCpf1Scores(deepcpf1_sequences)
  5.   └─basilisk::obtainEnvironmentPath(env_deepcpf1)
  6.     └─basilisk::setupBasiliskEnv(...)
  7.       ├─base::suppressMessages(install_python(version))
  8.       │ └─base::withCallingHandlers(...)
  9.       └─reticulate::install_python(version)
 10.         └─reticulate:::stopf("installation of Python %s failed", version)
── Error ('test-ontargets.R:29:5'): enPAM+GB scores ────────────────────────────
Error: installation of Python 3.6 failed
Backtrace:
     ▆
  1. ├─testthat::expect_equal(...) at test-ontargets.R:29:5
  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
  4. └─crisprScore::getEnPAMGBScores(enpamgb_sequences)
  5.   └─basilisk::obtainEnvironmentPath(env_enpamgb)
  6.     └─basilisk::setupBasiliskEnv(...)
  7.       ├─base::suppressMessages(install_python(version))
  8.       │ └─base::withCallingHandlers(...)
  9.       └─reticulate::install_python(version)
 10.         └─reticulate:::stopf("installation of Python %s failed", version)
── Error ('test-ontargets.R:33:5'): Lindel scores ──────────────────────────────
Error: installation of Python 3.6 failed
Backtrace:
     ▆
  1. ├─testthat::expect_equal(...) at test-ontargets.R:33:5
  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
  4. └─crisprScore::getLindelScores(lindel_sequences)
  5.   └─basilisk::basiliskRun(...)
  6.     └─basilisk::basiliskStart(...)
  7.       └─basilisk::obtainEnvironmentPath(env)
  8.         └─basilisk::setupBasiliskEnv(...)
  9.           ├─base::suppressMessages(install_python(version))
 10.           │ └─base::withCallingHandlers(...)
 11.           └─reticulate::install_python(version)
 12.             └─reticulate:::stopf("installation of Python %s failed", version)
── Error ('test-ontargets.R:38:5'): DeepHF scores ──────────────────────────────
Error: installation of Python 3.6 failed
Backtrace:
     ▆
  1. ├─testthat::expect_equal(...) at test-ontargets.R:38:5
  2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
  3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
  4. └─crisprScore::getDeepHFScores(deephf_sequences, enzyme = "WT")
  5.   └─basilisk::obtainEnvironmentPath(env_deephf)
  6.     └─basilisk::setupBasiliskEnv(...)
  7.       ├─base::suppressMessages(install_python(version))
  8.       │ └─base::withCallingHandlers(...)
  9.       └─reticulate::install_python(version)
 10.         └─reticulate:::stopf("installation of Python %s failed", version)

[ FAIL 5 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no crisprScore_1.13.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/crisprScore.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘crisprScore/DESCRIPTION’ ... OK
* this is package ‘crisprScore’ version ‘1.13.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.data-00000-of-00001
  crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.index
  crisprScore/inst/python/deepspcas9/DeepCas9_Final/PreTrain-Final-False-3-5-7-100-70-40-0.001-550-True-80-60.meta

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘crisprScore’ can be installed ... NOTE
Found the following notes/warnings:
  Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/crisprScore.Rcheck/00install.out’ for details.
* checking installed package size ... INFO
  installed size is  7.2Mb
  sub-directories of 1Mb or more:
    python   5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking line endings in shell scripts ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
       ▆
    1. ├─testthat::expect_equal(...) at test-ontargets.R:38:5
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. └─crisprScore::getDeepHFScores(deephf_sequences, enzyme = "WT")
    5.   └─basilisk::obtainEnvironmentPath(env_deephf)
    6.     └─basilisk::setupBasiliskEnv(...)
    7.       ├─base::suppressMessages(install_python(version))
    8.       │ └─base::withCallingHandlers(...)
    9.       └─reticulate::install_python(version)
   10.         └─reticulate:::stopf("installation of Python %s failed", version)
  
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/crisprScore.Rcheck/00check.log’
for details.

Installation output

crisprScore.Rcheck/00install.out

* installing *source* package ‘crisprScore’ ...
** this is package ‘crisprScore’ version ‘1.13.1’
** using non-staged installation via StagedInstall field
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (crisprScore)