Rapid builds (Linux only) of a subset of BioC 3.22<BR>Report updated every 6 hours - CHECK results for ExperimentHub on teran2

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	886
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for ExperimentHub on teran2

To the developers/maintainers of the ExperimentHub package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ExperimentHub

Version: 2.99.5

Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings ExperimentHub_2.99.5.tar.gz

StartedAt: 2025-06-17 20:32:43 -0400 (Tue, 17 Jun 2025)

EndedAt: 2025-06-17 20:34:38 -0400 (Tue, 17 Jun 2025)

EllapsedTime: 114.4 seconds

RetCode: 0

Status: WARNINGS

CheckDir: ExperimentHub.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings ExperimentHub_2.99.5.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/ExperimentHub.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘ExperimentHub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ExperimentHub’ version ‘2.99.5’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ExperimentHub’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) ExperimentHub-class.Rd:74-87: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:104-107: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:108-112: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:113-119: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:120-124: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:125-130: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:131-165: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:173-177: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:178-182: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:183-194: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:195-216: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:217-225: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:226-230: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:231-235: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:242-246: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:247-251: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:252-263: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:264-267: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:268-271: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:272-279: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:280-287: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:288-293: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:300-304: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:305-309: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/ExperimentHub.Rcheck/00check.log’
for details.

Installation output

ExperimentHub.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD INSTALL ExperimentHub
###
##############################################################################
##############################################################################


* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/R/site-library’
* installing *source* package ‘ExperimentHub’ ...
** this is package ‘ExperimentHub’ version ‘2.99.5’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ExperimentHub)

Tests output

Example timings

ExperimentHub.Rcheck/ExperimentHub-Ex.timings

name	user	system	elapsed
ExperimentHub-class	1.296	0.077	1.992
getExperimentHubOption	0	0	0
listResources	0	0	0