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This page was generated on 2025-07-09 08:30 -0400 (Wed, 09 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4781
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 16/47HostnameOS / ArchINSTALLBUILDCHECK
CTCF 0.99.11  (landing page)
Mikhail Dozmorov
Snapshot Date: 2025-07-09 06:00 -0400 (Wed, 09 Jul 2025)
git_url: https://git.bioconductor.org/packages/CTCF
git_branch: devel
git_last_commit: ecc98d9
git_last_commit_date: 2022-12-24 18:53:51 -0400 (Sat, 24 Dec 2022)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for CTCF on nebbiolo2

To the developers/maintainers of the CTCF package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CTCF
Version: 0.99.11
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CTCF
StartedAt: 2025-07-09 06:31:13 -0400 (Wed, 09 Jul 2025)
EndedAt: 2025-07-09 06:31:50 -0400 (Wed, 09 Jul 2025)
EllapsedTime: 36.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CTCF
###
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* checking for file ‘CTCF/DESCRIPTION’ ... OK
* preparing ‘CTCF’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CTCF.Rmd’ using rmarkdown

Quitting from CTCF.Rmd:126-130 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 'sort': could not find function "keepStandardChromosomes"
---
Backtrace:
    ▆
 1. ├─CTCF_hg38_all %>% keepStandardChromosomes() %>% sort()
 2. ├─methods (local) sort(.)
 3. └─base::.handleSimpleError(...)
 4.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CTCF.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'sort': could not find function "keepStandardChromosomes"
--- failed re-building ‘CTCF.Rmd’

SUMMARY: processing the following file failed:
  ‘CTCF.Rmd’

Error: Vignette re-building failed.
Execution halted