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This page was generated on 2025-10-30 15:01 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 133/430HostnameOS / ArchINSTALLBUILDCHECK
FlowSorted.Blood.EPIC 2.15.0  (landing page)
Lucas A. Salas
Snapshot Date: 2025-10-30 07:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/FlowSorted.Blood.EPIC
git_branch: devel
git_last_commit: ce5e87e
git_last_commit_date: 2025-10-29 10:00:17 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for FlowSorted.Blood.EPIC on nebbiolo1

To the developers/maintainers of the FlowSorted.Blood.EPIC package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: FlowSorted.Blood.EPIC
Version: 2.15.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FlowSorted.Blood.EPIC
StartedAt: 2025-10-30 11:15:57 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 11:19:21 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 204.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FlowSorted.Blood.EPIC
###
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* checking for file ‘FlowSorted.Blood.EPIC/DESCRIPTION’ ... OK
* preparing ‘FlowSorted.Blood.EPIC’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘FlowSorted.Blood.EPIC.Rmd’ using rmarkdown

Quitting from FlowSorted.Blood.EPIC.Rmd:78-131 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `getManifest()`:
! cannot load manifest package IlluminaHumanMethylationEPICmanifest
---
Backtrace:
    ▆
 1. └─FlowSorted.Blood.EPIC::estimateCellCounts2(...)
 2.   └─minfi (local) processMethod(combinedRGset)
 3.     └─minfi::getOOB(rgSet)
 4.       └─minfi::getProbeInfo(object, type = "I-Red")
 5.         ├─minfi::getManifest(object)
 6.         └─minfi::getManifest(object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FlowSorted.Blood.EPIC.Rmd' failed with diagnostics:
cannot load manifest package IlluminaHumanMethylationEPICmanifest
--- failed re-building ‘FlowSorted.Blood.EPIC.Rmd’

SUMMARY: processing the following file failed:
  ‘FlowSorted.Blood.EPIC.Rmd’

Error: Vignette re-building failed.
Execution halted