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This page was generated on 2025-10-30 15:01 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 260/430HostnameOS / ArchINSTALLBUILDCHECK
msigdb 1.19.0  (landing page)
Dharmesh D. Bhuva
Snapshot Date: 2025-10-30 07:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/msigdb
git_branch: devel
git_last_commit: 5e3257e
git_last_commit_date: 2025-10-29 10:03:52 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for msigdb on nebbiolo1

To the developers/maintainers of the msigdb package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: msigdb
Version: 1.19.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data msigdb
StartedAt: 2025-10-30 11:28:30 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 11:28:32 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 1.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data msigdb
###
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* checking for file ‘msigdb/DESCRIPTION’ ... OK
* preparing ‘msigdb’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
      -----------------------------------
ERROR: dependency ‘org.Mm.eg.db’ is not available for package ‘msigdb’
Perhaps try a variation of:
install.packages('org.Mm.eg.db')
* removing ‘/tmp/Rtmp4Hu6Yk/Rinst330784447cd6e/msigdb’
      -----------------------------------
ERROR: package installation failed