| Back to Workflows build report for BioC 3.22 |
This page was generated on 2025-07-15 16:30 -0400 (Tue, 15 Jul 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4785 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4524 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4565 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 16/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| maEndToEnd 2.29.0 (landing page) Stefanie Reisenauer
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | ERROR | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the maEndToEnd package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maEndToEnd |
| Version: 2.29.0 |
| Command: chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd |
| StartedAt: 2025-07-15 13:08:53 -0400 (Tue, 15 Jul 2025) |
| EndedAt: 2025-07-15 13:10:42 -0400 (Tue, 15 Jul 2025) |
| EllapsedTime: 108.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r maEndToEnd -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maEndToEnd
###
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* checking for file 'maEndToEnd/DESCRIPTION' ... OK
* preparing 'maEndToEnd':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MA-Workflow.Rmd' using rmarkdown
Quitting from MA-Workflow.Rmd:223-228 [getDataEBI]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Failure when receiving data from the peer [www.ebi.ac.uk]:
schannel: server closed abruptly (missing close_notify)
---
Backtrace:
▆
1. ├─ArrayExpress::getAE("E-MTAB-2967", path = raw_data_dir, type = "raw")
2. │ └─ArrayExpress:::get_request(httpURL)
3. │ └─httr::GET(qr)
4. │ └─httr:::request_perform(req, hu$handle$handle)
5. │ ├─httr:::request_fetch(req$output, req$url, handle)
6. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
7. │ └─curl::curl_fetch_memory(url, handle = handle)
8. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics:
Failure when receiving data from the peer [www.ebi.ac.uk]:
schannel: server closed abruptly (missing close_notify)
--- failed re-building 'MA-Workflow.Rmd'
SUMMARY: processing the following file failed:
'MA-Workflow.Rmd'
Error: Vignette re-building failed.
Execution halted