| Back to Workflows build report for BioC 3.23 |
This page was generated on 2025-11-14 16:30 -0500 (Fri, 14 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4826 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 17/28 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| methylationArrayAnalysis 1.35.0 (landing page) Jovana Maksimovic
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
|
To the developers/maintainers of the methylationArrayAnalysis package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: methylationArrayAnalysis |
| Version: 1.35.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis |
| StartedAt: 2025-11-14 13:05:26 -0500 (Fri, 14 Nov 2025) |
| EndedAt: 2025-11-14 13:13:36 -0500 (Fri, 14 Nov 2025) |
| EllapsedTime: 489.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
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* checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK
* preparing ‘methylationArrayAnalysis’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown
Quitting from methylationArrayAnalysis.Rmd:514-523 [gentracks]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `if (file == "" || length(file) == 0) ...`:
! missing value where TRUE/FALSE needed
---
Backtrace:
▆
1. └─Gviz::UcscTrack(...)
2. └─Gviz:::.cacheTracks(...)
3. ├─Gviz::.doCache(...)
4. │ ├─BiocGenerics::eval(expression, envir = callEnv)
5. │ └─base::eval(expression, envir = callEnv)
6. │ └─base::eval(expression, envir = callEnv)
7. ├─rtracklayer::trackNames(ucscTableQuery(session))
8. └─rtracklayer::trackNames(ucscTableQuery(session))
9. └─rtracklayer (local) .local(object, ...)
10. └─rtracklayer:::ucscTableTracks(object@genome)
11. └─rtracklayer:::rtracklayerGET(url, query = list(db = genome, hgta_group = "allTracks"))
12. └─rtracklayer:::htmlParse(content(response, as = "text"))
13. ├─base::suppressWarnings(...)
14. │ └─base::withCallingHandlers(...)
15. └─XML::htmlTreeParse(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘methylationArrayAnalysis.Rmd’
SUMMARY: processing the following file failed:
‘methylationArrayAnalysis.Rmd’
Error: Vignette re-building failed.
Execution halted