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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:GenomicDataCommons.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings GenomicDataCommons_1.28.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/GenomicDataCommons.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomicDataCommons/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GenomicDataCommons’ version ‘1.28.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GenomicDataCommons’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error in `curl::curl_fetch_disk(url, x$path, handle = handle)`: Recv failure: Connection reset by peer
  Backtrace:
      ▆
   1. └─GenomicDataCommons::gdcdata(few_file_ids) at test_data.R:32:5
   2.   └─base::mapply(...)
   3.     └─GenomicDataCommons (local) `<fn>`(...)
   4.       └─httr::GET(...)
   5.         └─httr:::request_perform(req, hu$handle$handle)
   6.           ├─httr:::request_fetch(req$output, req$url, handle)
   7.           └─httr:::request_fetch.write_disk(req$output, req$url, handle)
   8.             └─curl::curl_fetch_disk(url, x$path, handle = handle)
  
  [ FAIL 2 | WARN 1 | SKIP 0 | PASS 43 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/GenomicDataCommons.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL GenomicDataCommons
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘GenomicDataCommons’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicDataCommons)

R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(GenomicDataCommons)
Loading required package: magrittr

Attaching package: 'magrittr'

The following objects are masked from 'package:testthat':

    equals, is_less_than, not


Attaching package: 'GenomicDataCommons'

The following object is masked from 'package:stats':

    filter

> 
> test_check("GenomicDataCommons")
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 43 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_api.R:7:5'): status returns correctly ────────────────────────
length(res) not equal to 5.
1/1 mismatches
[1] 6 - 5 == 1
── Error ('test_data.R:32:5'): gdcdata ─────────────────────────────────────────
Error in `curl::curl_fetch_disk(url, x$path, handle = handle)`: Recv failure: Connection reset by peer
Backtrace:
    ▆
 1. └─GenomicDataCommons::gdcdata(few_file_ids) at test_data.R:32:5
 2.   └─base::mapply(...)
 3.     └─GenomicDataCommons (local) `<fn>`(...)
 4.       └─httr::GET(...)
 5.         └─httr:::request_perform(req, hu$handle$handle)
 6.           ├─httr:::request_fetch(req$output, req$url, handle)
 7.           └─httr:::request_fetch.write_disk(req$output, req$url, handle)
 8.             └─curl::curl_fetch_disk(url, x$path, handle = handle)

[ FAIL 2 | WARN 1 | SKIP 0 | PASS 43 ]
Error: Test failures
Execution halted