Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-08-06 17:38 -0400 (Tue, 06 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4756 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4490 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4519 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4468 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 972/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HilbertCurve 1.34.0 (landing page) Zuguang Gu
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HilbertCurve package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HilbertCurve |
Version: 1.34.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HilbertCurve_1.34.0.tar.gz |
StartedAt: 2024-08-05 00:34:41 -0400 (Mon, 05 Aug 2024) |
EndedAt: 2024-08-05 00:38:17 -0400 (Mon, 05 Aug 2024) |
EllapsedTime: 215.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HilbertCurve.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HilbertCurve_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/HilbertCurve.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘HilbertCurve/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HilbertCurve’ version ‘1.34.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HilbertCurve’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE hc_which,HilbertCurve: no visible binding for global variable ‘hc’ Undefined global functions or variables: hc * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed hc_layer-GenomicHilbertCurve-method 11.069 1.159 12.867 hc_layer-HilbertCurve-method 9.389 0.140 9.529 GenomicHilbertCurve 5.914 0.060 6.349 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘test-all.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.19-bioc/meat/HilbertCurve.Rcheck/00check.log’ for details.
HilbertCurve.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL HilbertCurve ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘HilbertCurve’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HilbertCurve)
HilbertCurve.Rcheck/tests/test-all.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve))) > > test_check("HilbertCurve") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ] > > proc.time() user system elapsed 3.470 0.234 3.693
HilbertCurve.Rcheck/HilbertCurve-Ex.timings
name | user | system | elapsed | |
GenomicHilbertCurve-class | 0.001 | 0.000 | 0.000 | |
GenomicHilbertCurve | 5.914 | 0.060 | 6.349 | |
HilbertCurve-class | 0 | 0 | 0 | |
HilbertCurve | 0.508 | 0.008 | 0.515 | |
default_overlay | 0.001 | 0.000 | 0.001 | |
hc_centered_text-HilbertCurve-method | 0.1 | 0.0 | 0.1 | |
hc_layer-GenomicHilbertCurve-method | 11.069 | 1.159 | 12.867 | |
hc_layer-HilbertCurve-method | 9.389 | 0.140 | 9.529 | |
hc_layer-dispatch | 0 | 0 | 0 | |
hc_level-HilbertCurve-method | 0.023 | 0.001 | 0.024 | |
hc_map-GenomicHilbertCurve-method | 2.724 | 0.008 | 2.731 | |
hc_normal_points-HilbertCurve-method | 0.000 | 0.001 | 0.000 | |
hc_offset-HilbertCurve-method | 0.005 | 0.003 | 0.008 | |
hc_png-HilbertCurve-method | 3.053 | 0.048 | 3.102 | |
hc_points-GenomicHilbertCurve-method | 0.305 | 0.008 | 0.314 | |
hc_points-HilbertCurve-method | 0.49 | 0.00 | 0.49 | |
hc_points-dispatch | 0 | 0 | 0 | |
hc_polygon-GenomicHilbertCurve-method | 0.330 | 0.004 | 0.334 | |
hc_polygon-HilbertCurve-method | 0.093 | 0.000 | 0.093 | |
hc_polygon-dispatch | 0 | 0 | 0 | |
hc_rect-GenomicHilbertCurve-method | 0.262 | 0.000 | 0.262 | |
hc_rect-HilbertCurve-method | 0.061 | 0.004 | 0.064 | |
hc_rect-dispatch | 0 | 0 | 0 | |
hc_segmented_points-HilbertCurve-method | 0 | 0 | 0 | |
hc_segments-GenomicHilbertCurve-method | 0.454 | 0.008 | 0.463 | |
hc_segments-HilbertCurve-method | 0.074 | 0.004 | 0.078 | |
hc_segments-dispatch | 0 | 0 | 0 | |
hc_text-GenomicHilbertCurve-method | 0.199 | 0.008 | 0.208 | |
hc_text-HilbertCurve-method | 0.053 | 0.004 | 0.057 | |
hc_text-dispatch | 0 | 0 | 0 | |
hc_which-GenomicHilbertCurve-method | 0 | 0 | 0 | |
hc_which-HilbertCurve-method | 0 | 0 | 0 | |
hc_which-dispatch | 0.001 | 0.000 | 0.001 | |
is_white | 0 | 0 | 0 | |
show-HilbertCurve-method | 0.007 | 0.000 | 0.007 | |
unzoom-HilbertCurve-method | 0.006 | 0.000 | 0.006 | |
zoom-HilbertCurve-method | 0.006 | 0.000 | 0.006 | |