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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:IsoCorrectoR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings IsoCorrectoR_1.23.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/IsoCorrectoR.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IsoCorrectoR/DESCRIPTION’ ... OK
* this is package ‘IsoCorrectoR’ version ‘1.23.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IsoCorrectoR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.0Mb
  sub-directories of 1Mb or more:
    testdata   5.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
IsoCombinations: no visible global function definition for ‘pick’
Undefined global functions or variables:
  pick
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/IsoCorrectoR.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL IsoCorrectoR
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘IsoCorrectoR’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (IsoCorrectoR)

R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(IsoCorrectoR)
IsoCorrectoR v1.23.0

For help, type browseVignettes('IsoCorrectoR') to view the IsoCorrectoR documentation or ?IsoCorrection
to view the documentation of the IsoCorrection() function.

IsoCorrectoR is licensed under GPL-3. It is free software and comes without any warranty.

If you use IsoCorrectoR in published research, please cite:

Paul Heinrich, Christian Kohler et al.
Correction for natural isotope abundance and tracer impurity in MS-, MS/MS- and high-resolution multiple-tracer-data from stable isotope labeling experiments with IsoCorrectoR (Scientific reports, 2018)


> 
> test_check("IsoCorrectoR")
[ FAIL 0 | WARN 0 | SKIP 2 | PASS 372 ]

══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• Skipped (2): 'test_end_to_end.R:123:3', 'test_read_write_excel.R:66:3'

[ FAIL 0 | WARN 0 | SKIP 2 | PASS 372 ]
> 
> proc.time()
   user  system elapsed 
 47.039   1.372  48.423