Mustafa Erhan Ozer
| Snapshot Date: 2024-10-09 14:00 -0400 (Wed, 09 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_19 |
| git_last_commit: 53d7b05 |
| git_last_commit_date: 2024-08-30 17:32:42 -0400 (Fri, 30 Aug 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-10-11 20:43 -0400 (Fri, 11 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4529 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4479 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2112/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.4.7 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.4.7 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.4.7.tar.gz |
| StartedAt: 2024-10-11 13:27:16 -0400 (Fri, 11 Oct 2024) |
| EndedAt: 2024-10-11 13:33:20 -0400 (Fri, 11 Oct 2024) |
| EllapsedTime: 364.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.4.7.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.4.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 11254,8471,50506,84693,8842,132001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406938,3155,574447,216,87178,3290
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56606,4299,131669,7407,4714,7466
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 134,1869,790,4089,57380,1641
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 275,1409,1203,6934,2683,3507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6556,8309,10102,2115,2591,3291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7515,7036,4312,91647,3554,3945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6906,3636,22796,5971,8050,2063
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1607,3440,4728,9380,6565,3980
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7471,4722,3651,5702,5595,5372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10102,644096,265,4967,6338,2581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7132,1644,9630,836,55526,5188
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5789,28958,5214,201595,6521,10059
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 336,7084,57085,5723,6715,3945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 335,7942,6934,5590,6338,5467
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9382,10457,5443,285848,706,100128525
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,4843,5444,7099,133522,3728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 229,3423,79731,1514,6319,7248
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 496,4035,2695,2516,3948,1524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51128,57215,5730,56652,54901,1244
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4843,64900,6448,84706,105372280,64601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11035,1337,2793,383,53632,5621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150,5409,54578,1650,5741,10667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5095,335,4012,124976,2944,388743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2266,627,3931,56606,53345,54344
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51478,5442,64788,7471,6775,3486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7431,9076,9365,3091,6383,388962
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1371,23600,3899,640,9451,5306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8678,249,7355,6339,133396,54809
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2683,5428,9575,80347,7038,2876
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6897,407004,11136,3600,3308,8471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 656,338,7320,26291,3358,7528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1401,105372280,25828,3383,5563,54806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57620,3073,2034,23556,54331,38
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406991,434,10269,8722,38,7025
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57570,10135,6748,51024,6564,4828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3293,1489,26354,2155,5295,1641
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 582,9692,358,84649,1890,2673
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1586,3159,50674,7840,1889,653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3958,1029,3949,3673,2804,5644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80222,5207,169026,3558,3351,4683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7320,10094,2950,57128,10845,79144
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 655,10524,100529063,7292,10580,3767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3101,7076,4724,3383,26227,22868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2760,85365,10938,686,407021,56848
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8560,123,1208,100128525,9971,4598
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9498,5444,116228,3304,55503,10599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3576,191,239,4314,8639,1806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100506742,55005,191,5092,101180976,406922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,1356,3779,147007,10524,3795
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54331,3596,55572,4886,388585,487
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5241,60528,10938,5562,4319,3162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1509,2584,2170,6789,64241,9945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89866,1200,116931,26175,7035,60
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,9420,9332,4886,3458,5370
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9672,407045,119559,5192,6891,63899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6556,5972,4548,5551,5276,9507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 790,55644,1607,2947,4552,54577
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123263,350,1468,9374,145264,5860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2641,2099,138050,54205,50943,6374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1641,50506,6833,7352,694,2702
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2348,4314,7942,85479,84649,5625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2203,89874,1361,84902,3482,4233
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9512,5741,3293,29968,3113,6897
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 196385,9607,51316,216,5009,10116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2052,4314,51555,253943,57380,3117
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 824,8854,2166,84340,1353,7077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8517,197322,200539,51293,664,4887
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5313,79602,6648,23163,7172,5468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23175,177,2695,3073,476,84062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4247,132,4069,549,4988,353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10166,3791,5770,516,84274,51167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 256471,10965,2804,10295,940,29926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5501,4879,8678,57215,9779,3685
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84300,518,358,5078,3630,10116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2328,1956,4524,6906,3145,8243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54331,493,4049,175,55024,51081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388753,6448,406947,51608,6389,338821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6891,6616,10243,6571,84833,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4723,11213,105372280,5467,2170,1374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406937,100303755,7345,3684,655,5713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7030,3551,3958,9507,10845,84833
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6009,64116,91869,1672,3692,1353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4852,79783,4860,2548,132,3157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1716,5265,8560,5193,7450,9332
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2643,4118,3773,942,6811,5644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29947,6569,130120,5367,4758,3174
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55970,191,2260,5499,27232,405
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1374,1812,84317,3145,26291,5211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10724,4232,4899,952,7100,51085
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3643,148979,3483,285362,6748,133522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1737,2760,5126,7077,1080,5590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83884,3643,10229,54331,401,644096
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8722,2784,435,152926,728294,7248
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7320,170302,7099,7077,253559,7515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 131669,6786,5331,1230,517,23654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51117,8462,6571,948,2798,1268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3934,84061,5501,7097,5805,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 134,493,6403,4040,5239,3351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29928,1906,4023,1072,8431,23409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10935,155,7019,1075,8659,6341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 134,23291,1717,51478,1557,11231
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7407,5161,26191,2776,54798,56999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23462,3099,4160,1312,347411,147007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9451,8945,9415,596,11222,2235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 231,6554,57817,846,3779,1409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10560,2949,2053,54331,51119,3485
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22796,201595,4860,1557,6569,2683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2740,7099,1337,51478,1443,407040
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2147,6462,4306,5443,57176,92609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2788,5286,10938,1340,2475,23530
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81704,3375,92935,3060,5228,11093
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51738,26354,27232,7289,51478,388753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3155,26521,23530,1282,5563,1584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 364,1347,133,4864,10965,5972
--> return NULL...
2024-10-11 13:33:08.858 R[81219:376108670] XType: Using static font registry.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
72.385 1.479 79.401
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.980 | 0.062 | 1.740 | |