Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-09-10 17:33 -0400 (Tue, 10 Sep 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4758
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4495
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 698/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
factR 1.6.0  (landing page)
Fursham Hamid
Snapshot Date: 2024-09-08 14:00 -0400 (Sun, 08 Sep 2024)
git_url: https://git.bioconductor.org/packages/factR
git_branch: RELEASE_3_19
git_last_commit: f704331
git_last_commit_date: 2024-04-30 11:43:20 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

BUILD results for factR on nebbiolo1

To the developers/maintainers of the factR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/factR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: factR
Version: 1.6.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data factR
StartedAt: 2024-09-08 17:23:21 -0400 (Sun, 08 Sep 2024)
EndedAt: 2024-09-08 17:24:37 -0400 (Sun, 08 Sep 2024)
EllapsedTime: 76.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data factR
###
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* checking for file ‘factR/DESCRIPTION’ ... OK
* preparing ‘factR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘factR.Rmd’ using rmarkdown
trying URL 'ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M25/gencode.vM25.annotation.gtf.gz'

Quitting from lines 196-200 [import.gencode] (factR.Rmd)
Error: processing vignette 'factR.Rmd' failed with diagnostics:
cannot open URL 'ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M25/gencode.vM25.annotation.gtf.gz'
--- failed re-building ‘factR.Rmd’

SUMMARY: processing the following file failed:
  ‘factR.Rmd’

Error: Vignette re-building failed.
Execution halted