Back to Long Tests report for BioC 3.19

This page was generated on 2024-09-07 23:55 -0400 (Sat, 07 Sep 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4758
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4495
merida1macOS 12.7.5 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4524
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/33HostnameOS / ArchCHECK
biodbLipidmaps 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-09-07 09:55 -0400 (Sat, 07 Sep 2024)
git_url: https://git.bioconductor.org/packages/biodbLipidmaps
git_branch: RELEASE_3_19
git_last_commit: 323ed25
git_last_commit_date: 2024-04-30 11:39:02 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK  
palomino7Windows Server 2022 Datacenter / x64  OK  
merida1macOS 12.7.5 Monterey / x86_64  OK  

CHECK results for biodbLipidmaps on merida1

To the developers/maintainers of the biodbLipidmaps package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbLipidmaps
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.10.0.tar.gz
StartedAt: 2024-09-07 16:01:24 -0400 (Sat, 07 Sep 2024)
EndedAt: 2024-09-07 16:05:07 -0400 (Sat, 07 Sep 2024)
EllapsedTime: 223.8 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbLipidmaps.Rcheck
Warnings: 0

Tests output

biodbLipidmaps.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbLipidmaps)
Warning message:
In fun(libname, pkgname) :
  Package 'biodbLipidmaps' is deprecated and will be removed from
  Bioconductor version 3.20
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbLipidmaps")
biodb.INFO [2024-09-07 16:02:27.555][biodb::testContext]
biodb.INFO [2024-09-07 16:02:27.559][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:02:27.561][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-09-07 16:02:27.563][biodb::testContext] ********************************************************************************
biodb.INFO [2024-09-07 16:02:27.564][biodb::testContext]
biodb.INFO [2024-09-07 16:02:27.572][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-09-07 16:02:27.575][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-09-07 16:02:27.585][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:02:27.587][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-09-07 16:02:27.589][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-09-07 16:02:27.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.595][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-09-07 16:02:27.630][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-09-07 16:02:27.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.637][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-09-07 16:02:27.638][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-09-07 16:02:27.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.657][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-09-07 16:02:27.658][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-09-07 16:02:27.659][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-09-07 16:02:27.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.664][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-09-07 16:02:27.666][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-09-07 16:02:27.667][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-09-07 16:02:27.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.672][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-09-07 16:02:27.674][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-09-07 16:02:27.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.678][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-09-07 16:02:27.680][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-09-07 16:02:27.681][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-09-07 16:02:27.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.686][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-09-07 16:02:27.687][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-09-07 16:02:27.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.692][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-09-07 16:02:27.693][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-09-07 16:02:27.694][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-09-07 16:02:27.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.699][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:02:27.701][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-09-07 16:02:27.702][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-09-07 16:02:27.703][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-09-07 16:02:27.705][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-09-07 16:02:27.706][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-09-07 16:02:27.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.711][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-09-07 16:02:27.713][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-09-07 16:02:27.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.718][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-09-07 16:02:27.720][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-09-07 16:02:27.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.725][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-09-07 16:02:27.726][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-09-07 16:02:27.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.732][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-09-07 16:02:27.734][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-09-07 16:02:27.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.741][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-09-07 16:02:27.743][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-09-07 16:02:27.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.748][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-09-07 16:02:27.749][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-09-07 16:02:27.761][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-09-07 16:02:27.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.768][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-09-07 16:02:27.769][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-09-07 16:02:27.771][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-09-07 16:02:27.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:27.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:27.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:27.781][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-09-07 16:02:27.830][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.852][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-09-07 16:02:27.854][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.855][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:27.856][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.857][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.859][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.860][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.861][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:02:27.862][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:27.864][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.865][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-09-07 16:02:27.866][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:27.867][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.869][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.870][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:27.870][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:02:27.870][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:02:27.870][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:02:27.870][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:02:27.871][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:27.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:27.874][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:27.875][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:27.876][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:27.877][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:27.878][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.880][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.881][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:27.882][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:27.883][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.884][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.886][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-09-07 16:02:27.888][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.889][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:02:27.891][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.892][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:27.893][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.894][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.896][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.897][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.898][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:02:27.899][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:27.901][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.902][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-09-07 16:02:27.903][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:27.905][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.906][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.907][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:27.907][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:02:27.907][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-09-07 16:02:27.907][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-09-07 16:02:27.907][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-09-07 16:02:27.908][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:27.910][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:27.911][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:27.912][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:27.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:27.914][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:27.916][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.917][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.918][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:27.919][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:27.920][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.922][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.923][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-09-07 16:02:27.926][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.928][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-09-07 16:02:27.934][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.935][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:27.936][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.938][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.939][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.940][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.941][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:02:27.943][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:27.944][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.945][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-09-07 16:02:27.946][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:27.948][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.949][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.950][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.951][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:27.952][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:27.953][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:27.955][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:27.956][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:27.957][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:27.958][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.959][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.961][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:27.962][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:27.963][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.964][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.966][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-09-07 16:02:27.968][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.969][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-09-07 16:02:27.970][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.971][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:27.973][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.974][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.975][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.976][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.978][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-09-07 16:02:27.979][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:27.980][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:27.981][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-09-07 16:02:27.983][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:27.984][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.985][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:27.986][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.988][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:27.989][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:27.990][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:27.991][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:27.992][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:27.993][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:27.995][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:27.996][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:27.997][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:27.998][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:27.999][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:28.001][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:28.005][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:02:28.006][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.106][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-09-07 16:02:28.111][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-09-07 16:02:28.113][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-09-07 16:02:28.115][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-09-07 16:02:28.117][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-09-07 16:02:28.119][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-09-07 16:02:28.120][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-09-07 16:02:28.122][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-09-07 16:02:28.124][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-09-07 16:02:28.126][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-09-07 16:02:28.128][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-09-07 16:02:28.130][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-09-07 16:02:28.131][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-09-07 16:02:28.133][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-09-07 16:02:28.135][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-09-07 16:02:28.137][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:02:28.139][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-09-07 16:02:28.140][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-09-07 16:02:28.142][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-09-07 16:02:28.144][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-09-07 16:02:28.146][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-09-07 16:02:28.148][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-09-07 16:02:28.150][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-09-07 16:02:28.151][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-09-07 16:02:28.153][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-09-07 16:02:28.155][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-09-07 16:02:28.157][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-09-07 16:02:28.159][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-09-07 16:02:28.160][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-09-07 16:02:28.162][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-09-07 16:02:28.164][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-09-07 16:02:28.166][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-09-07 16:02:28.168][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-09-07 16:02:28.169][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-09-07 16:02:28.171][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-09-07 16:02:28.173][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-09-07 16:02:28.175][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-09-07 16:02:28.177][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-09-07 16:02:28.184][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-09-07 16:02:28.186][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-09-07 16:02:28.188][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-09-07 16:02:28.190][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-09-07 16:02:28.192][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-09-07 16:02:28.193][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-09-07 16:02:28.195][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-09-07 16:02:28.197][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-09-07 16:02:28.198][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-09-07 16:02:28.200][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-09-07 16:02:28.202][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-09-07 16:02:28.204][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-09-07 16:02:28.206][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-09-07 16:02:28.207][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-09-07 16:02:28.209][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-09-07 16:02:28.211][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-09-07 16:02:28.212][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-09-07 16:02:28.214][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-09-07 16:02:28.216][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-09-07 16:02:28.218][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-09-07 16:02:28.220][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-09-07 16:02:28.221][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-09-07 16:02:28.223][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-09-07 16:02:28.225][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-09-07 16:02:28.227][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-09-07 16:02:28.229][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-09-07 16:02:28.231][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-09-07 16:02:28.232][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-09-07 16:02:28.235][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-09-07 16:02:28.237][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-09-07 16:02:28.239][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-09-07 16:02:28.241][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-09-07 16:02:28.243][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-09-07 16:02:28.245][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-09-07 16:02:28.247][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-09-07 16:02:28.249][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-09-07 16:02:28.251][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-09-07 16:02:28.253][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-09-07 16:02:28.255][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-09-07 16:02:28.257][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-09-07 16:02:28.258][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-09-07 16:02:28.260][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-09-07 16:02:28.262][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-09-07 16:02:28.265][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-09-07 16:02:28.267][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-09-07 16:02:28.276][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-09-07 16:02:28.278][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-09-07 16:02:28.282][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-09-07 16:02:28.284][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.286][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-09-07 16:02:28.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:28.442][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2024-09-07 16:02:28.456][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2024-09-07 16:02:28.458][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:28.459][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-09-07 16:02:28.460][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:28.462][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-09-07 16:02:28.463][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:28.464][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-09-07 16:02:28.465][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:28.467][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-09-07 16:02:28.468][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-09-07 16:02:28.469][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-09-07 16:02:28.470][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:28.471][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2024-09-07 16:02:28.473][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-09-07 16:02:28.474][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2024-09-07 16:02:28.474][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2024-09-07 16:02:28.474][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2024-09-07 16:02:28.474][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2024-09-07 16:02:28.474][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2024-09-07 16:02:28.474][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2024-09-07 16:02:28.474][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2024-09-07 16:02:28.474][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2024-09-07 16:02:28.474][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2024-09-07 16:02:28.475][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-09-07 16:02:28.477][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-09-07 16:02:28.477][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-09-07 16:02:28.478][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-09-07 16:02:28.479][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:28.480][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:28.481][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-09-07 16:02:28.483][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-09-07 16:02:28.484][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-09-07 16:02:28.485][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-09-07 16:02:28.486][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2024-09-07 16:02:28.486][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2024-09-07 16:02:28.487][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-09-07 16:02:28.488][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-09-07 16:02:28.490][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-09-07 16:02:28.491][self$setPropertyValue]
biodb.DEBUG[2024-09-07 16:02:28.499][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2024-09-07 16:02:28.501][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-09-07 16:02:28.525][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2024-09-07 16:02:28.527][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2024-09-07 16:02:28.531][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2024-09-07 16:02:28.536][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2024-09-07 16:02:28.541][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2024-09-07 16:02:28.542][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2024-09-07 16:02:28.544][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2024-09-07 16:02:28.545][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2024-09-07 16:02:28.556][biodb::testThat]
biodb.INFO [2024-09-07 16:02:28.558][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-09-07 16:02:28.559][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:28.560][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:28.564][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000001-content.tsv".
biodb.DEBUG[2024-09-07 16:02:28.567][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:28.571][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-09-07 16:02:28.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:28.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:28.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:28.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:28.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:28.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:28.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:28.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:28.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.647][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:28.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:28.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:28.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:28.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:28.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:28.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:28.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:28.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:28.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:28.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:28.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:28.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:28.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.728][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:28.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:28.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:28.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:28.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.753][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:28.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.773][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:28.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:28.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:28.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:28.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.872][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:28.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:28.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.877][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:28.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:28.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:28.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:28.950][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000001.
biodb.TRACE[2024-09-07 16:02:28.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:28.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:28.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:28.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:28.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:28.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:28.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:28.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:28.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:28.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:28.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.012][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.055][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.065][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.094][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.097][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.134][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.168][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.169][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.172][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.203][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.205][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.242][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.277][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.293][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.297][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.303][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.305][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.307][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.314][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.317][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.327][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.338][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.341][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.351][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.374][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000002-content.tsv".
biodb.DEBUG[2024-09-07 16:02:29.430][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:29.431][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-09-07 16:02:29.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:29.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:29.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:29.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:29.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:29.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:29.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:29.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:29.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:29.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:29.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:29.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.538][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:29.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.543][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:29.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.558][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.564][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.579][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:29.616][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000002.
biodb.TRACE[2024-09-07 16:02:29.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:29.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:29.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:29.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:29.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.678][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:29.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.779][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.782][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:29.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:29.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.814][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.818][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:29.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:29.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.849][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.851][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.853][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:29.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.885][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.889][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.920][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.922][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.924][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:29.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:29.995][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.997][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:29.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:29.999][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.015][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.019][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.028][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.034][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.036][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.038][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.044][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.048][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.054][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.055][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.057][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.063][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.067][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.075][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.085][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA08040013-content.tsv".
biodb.DEBUG[2024-09-07 16:02:30.086][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:30.088][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-09-07 16:02:30.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:30.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:30.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:30.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:30.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:30.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:30.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:30.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.131][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.136][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.176][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:30.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.207][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:30.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.212][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:30.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.227][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:30.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.257][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.262][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:30.307][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA08040013.
biodb.TRACE[2024-09-07 16:02:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:30.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:30.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:30.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:30.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.341][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.387][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.424][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.428][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.458][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.462][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.493][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.494][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.496][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.527][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.528][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.570][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.600][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.603][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.629][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.634][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.635][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.637][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.671][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.705][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.721][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.725][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.735][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.741][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.742][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.745][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.751][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.754][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.765][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.767][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.769][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.775][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.778][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.784][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.788][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.794][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.795][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.797][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.807][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:02:30.817][biodb::testThat]
biodb.INFO [2024-09-07 16:02:30.818][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-09-07 16:02:30.819][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:30.821][biodb::testThat]
biodb.DEBUG[2024-09-07 16:02:30.823][private$loadEntries] Creating entries from ids [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.DEBUG[2024-09-07 16:02:30.830][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 3 id(s)...
biodb.TRACE[2024-09-07 16:02:30.835][cch$loadFileContent] Trying to load 3 files from cache: [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.TRACE[2024-09-07 16:02:30.838][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-09-07 16:02:30.841][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000001.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000002.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA08040013.tsv".
biodb.DEBUG[2024-09-07 16:02:30.842][conn$getEntryContent] 3 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:30.844][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 3 content(s).
biodb.DEBUG[2024-09-07 16:02:30.845][self$createEntryFromContent] Parsing 3 LIPID MAPS Structure entries.
biodb.DEBUG[2024-09-07 16:02:30.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:30.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:30.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:30.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:30.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:30.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:30.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:30.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:30.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.885][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:30.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:30.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:30.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:30.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:30.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:30.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:30.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:30.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:30.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:30.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:30.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.003][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:31.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:31.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:31.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:31.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:31.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:31.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:31.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:31.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:31.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:31.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:31.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.069][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:31.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:31.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.074][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:31.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:31.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:31.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:31.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:31.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:31.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:31.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:31.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:31.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:31.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.104][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:31.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:31.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:31.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:31.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:31.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.129][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:31.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.148][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:31.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.157][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.172][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:31.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:31.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:31.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:31.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:31.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:31.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:31.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:31.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:31.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:31.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:31.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.230][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:31.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:31.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:31.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:31.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:31.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.245][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:31.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:31.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:31.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:31.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:31.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:31.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:31.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:31.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:31.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:31.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.270][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:31.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:31.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.275][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:31.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:31.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:31.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.300][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.305][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:31.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.319][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:31.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.353][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.358][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:31.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:31.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:31.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:31.432][self$createEntryFromContent] Accession numbers: LMFA00000001, LMFA00000002, LMFA08040013.
biodb.TRACE[2024-09-07 16:02:31.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:31.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:31.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:31.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-09-07 16:02:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-09-07 16:02:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:31.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-09-07 16:02:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:02:31.501][biodb::testThat]
biodb.INFO [2024-09-07 16:02:31.502][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-09-07 16:02:31.503][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:31.504][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:31.508][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.512][ef$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:31.513][function(conn, opt)] Testing searchForEntries() with entry "LMFA00000001" and field "name".
biodb.TRACE[2024-09-07 16:02:31.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:31.569][function(conn, opt)] With value "2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-09-07 16:02:31.575][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-09-07 16:02:31.604][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:02:31.626][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-09-07 16:02:31.627][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:31.629][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.DEBUG[2024-09-07 16:02:31.631][function(conn, opt)] With found IDs [1]: "LMFA00000001".
biodb.TRACE[2024-09-07 16:02:31.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:31.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:31.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.650][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:02:31.655][biodb::testThat]
biodb.INFO [2024-09-07 16:02:31.656][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-09-07 16:02:31.657][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:31.659][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:31.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:31.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:31.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:31.849][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-09-07 16:02:31.853][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:02:31.855][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-09-07 16:02:31.856][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:31.858][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.INFO [2024-09-07 16:02:31.879][biodb::testThat]
biodb.INFO [2024-09-07 16:02:31.881][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-09-07 16:02:31.882][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:31.883][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:31.901][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:31.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:31.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:31.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:31.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.972][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-09-07 16:02:31.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-09-07 16:02:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-09-07 16:02:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-09-07 16:02:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:02:32.074][biodb::testThat]
biodb.INFO [2024-09-07 16:02:32.075][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-09-07 16:02:32.076][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:32.078][biodb::testThat]
biodb.INFO [2024-09-07 16:02:32.089][biodb::testThat]
biodb.INFO [2024-09-07 16:02:32.091][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-09-07 16:02:32.092][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:32.093][biodb::testThat]
biodb.INFO [2024-09-07 16:02:32.103][biodb::testThat]
biodb.INFO [2024-09-07 16:02:32.104][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-09-07 16:02:32.106][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:32.107][biodb::testThat]
biodb.DEBUG[2024-09-07 16:02:32.112][function(conn, opt)] Trying to download "https://www.lipidmaps.org/data?LMID=LMFA00000001".
biodb.DEBUG[2024-09-07 16:02:36.442][getUrlContent] Use RCurl for downloading content of URL https://www.lipidmaps.org/data?LMID=LMFA00000001.
biodb.INFO [2024-09-07 16:02:36.865][biodb::testThat]
biodb.INFO [2024-09-07 16:02:36.866][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-09-07 16:02:36.867][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:36.869][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:36.876][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:36.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:36.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:36.880][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:36.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:36.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:36.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:36.885][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:02:36.887][biodb::testThat]
biodb.INFO [2024-09-07 16:02:36.888][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-09-07 16:02:36.889][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:36.891][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:36.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:36.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:36.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:36.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:36.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:36.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:36.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:37.021][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-09-07 16:02:37.026][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:02:37.027][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-09-07 16:02:37.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:37.030][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.DEBUG[2024-09-07 16:02:37.115][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-09-07 16:02:37.119][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:02:37.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-09-07 16:02:37.122][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:37.124][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.TRACE[2024-09-07 16:02:37.140][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:02:37.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:02:37.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:37.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:37.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:02:37.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:02:37.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:37.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:37.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:37.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:37.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:37.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:37.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:37.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:37.193][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2024-09-07 16:02:37.280][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:02:37.281][cch$loadFileContent] Trying to load 1 files from cache: [1]: "304383a7dc8c451be84009e31d831359".
biodb.TRACE[2024-09-07 16:02:37.283][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:37.431][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.content".
biodb.DEBUG[2024-09-07 16:02:38.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2024-09-07 16:02:38.756][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:02:38.758][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7f71825f1888a7b29e4b8407502d21e3".
biodb.TRACE[2024-09-07 16:02:38.760][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:38.783][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.content".
biodb.DEBUG[2024-09-07 16:02:38.817][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.DEBUG[2024-09-07 16:02:38.825][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:02:38.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "fd41c675dd237f33cdaafcbb15058c54".
biodb.TRACE[2024-09-07 16:02:38.828][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:38.830][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.content".
biodb.TRACE[2024-09-07 16:02:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:02:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:02:38.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:02:38.865][biodb::testThat]
biodb.INFO [2024-09-07 16:02:38.867][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-09-07 16:02:38.868][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:02:38.869][biodb::testThat]
biodb.TRACE[2024-09-07 16:02:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:02:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:02:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:02:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:02:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:02:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:02:38.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:02:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:02:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:02:38.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:02:38.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:02:38.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:02:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:38.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:38.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:38.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:38.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:38.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:38.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:38.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:38.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:38.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:38.988][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:02:39.067][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:02:39.069][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-09-07 16:02:39.070][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:39.737][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-09-07 16:02:40.924][private$loadEntries] Creating entries from ids [1]: "LMFA00000003".
biodb.DEBUG[2024-09-07 16:02:40.987][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2024-09-07 16:02:40.989][cch$loadFileContent] Trying to load 1 files from cache: [1]: "LMFA00000003".
biodb.TRACE[2024-09-07 16:02:40.990][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:02:41.017][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000003.tsv".
biodb.DEBUG[2024-09-07 16:02:41.019][conn$getEntryContent] 1 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2024-09-07 16:02:41.020][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-09-07 16:02:41.022][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-09-07 16:02:41.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:41.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:41.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:41.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:41.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:41.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:41.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:41.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:41.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:41.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:41.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:02:41.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:02:41.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.056][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:41.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-09-07 16:02:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.061][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:41.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-09-07 16:02:41.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:41.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:41.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:02:41.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:41.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:41.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:41.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:02:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.086][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:41.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.092][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-09-07 16:02:41.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:02:41.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:41.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:02:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:02:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:41.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:41.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:41.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-09-07 16:02:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:41.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:41.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:02:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:41.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.142][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-09-07 16:02:41.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:02:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.148][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.154][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:41.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:41.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:41.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:41.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:41.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:41.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:02:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:02:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:02:41.208][self$createEntryFromContent] Accession numbers: LMFA00000003.
biodb.DEBUG[2024-09-07 16:02:41.224][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:02:41.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:41.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:41.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:41.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:41.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:41.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:41.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.255][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.256][private$selectFields]
biodb.TRACE[2024-09-07 16:02:41.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:02:41.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:02:41.260][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.262][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.263][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.266][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.267][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.269][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.272][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.273][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.275][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.276][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.278][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.281][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.282][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:02:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.296][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:02:41.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:41.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:41.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:41.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:41.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:41.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:41.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.365][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.366][private$selectFields]
biodb.TRACE[2024-09-07 16:02:41.368][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:02:41.369][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:02:41.382][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.384][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.385][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.387][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.389][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.390][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.392][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.393][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.395][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.396][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.397][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.399][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.401][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:02:41.402][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.412][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.417][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:02:41.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:41.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:41.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:41.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:41.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:41.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:41.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:41.431][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.436][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.441][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.442][private$selectFields]
biodb.TRACE[2024-09-07 16:02:41.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:02:41.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:02:41.446][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.447][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.448][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.450][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.452][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.453][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.457][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.458][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:41.461][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.462][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.464][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.466][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:02:41.467][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.472][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.500][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:41.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:41.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:41.510][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:02:41.511][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:02:41.513][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:02:41.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:41.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:41.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:41.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:41.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:41.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:41.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:41.538][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:02:41.543][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:02:41.544][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:02:41.546][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.TRACE[2024-09-07 16:02:45.558][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01).
biodb.DEBUG[2024-09-07 16:02:50.987][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:02:50.990][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content"
biodb.TRACE[2024-09-07 16:02:51.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.request"
biodb.DEBUG[2024-09-07 16:02:52.179][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:02:52.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:52.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:52.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:52.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:52.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:52.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:52.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:52.239][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.277][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.278][private$selectFields]
biodb.TRACE[2024-09-07 16:02:52.280][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:02:52.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:02:52.282][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.283][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.285][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.287][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.288][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.289][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.292][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.293][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.307][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.308][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.309][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.312][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.313][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:02:52.314][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.319][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.329][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:02:52.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:52.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:52.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:52.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:52.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:52.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:52.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.353][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.354][private$selectFields]
biodb.TRACE[2024-09-07 16:02:52.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:02:52.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:02:52.357][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.358][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.360][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.362][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.363][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.365][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.367][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.368][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.369][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.371][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.372][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.374][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.375][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:02:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.381][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:02:52.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:52.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:52.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:52.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:52.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:52.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:52.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:02:52.406][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.410][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.415][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.416][private$selectFields]
biodb.TRACE[2024-09-07 16:02:52.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:02:52.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:02:52.420][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.421][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.422][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.425][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.426][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.427][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.429][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.430][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.432][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:02:52.433][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.434][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.436][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.438][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:02:52.439][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.449][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:02:52.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:02:52.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:02:52.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:02:52.455][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:02:52.456][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:02:52.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:02:52.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:02:52.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:02:52.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:02:52.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:02:52.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:02:52.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:02:52.474][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:02:52.524][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:02:52.526][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:02:52.547][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.TRACE[2024-09-07 16:02:56.698][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01).
biodb.DEBUG[2024-09-07 16:03:02.163][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:02.166][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content"
biodb.TRACE[2024-09-07 16:03:02.273][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.request"
biodb.DEBUG[2024-09-07 16:03:03.300][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:03.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:03.315][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.320][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.325][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.326][private$selectFields]
biodb.TRACE[2024-09-07 16:03:03.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:03.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:03.329][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.331][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.332][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.334][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.335][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.337][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.339][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.340][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.341][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.342][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.344][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.346][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.347][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:03.349][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.354][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.358][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.363][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:03:03.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.382][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.387][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.388][private$selectFields]
biodb.TRACE[2024-09-07 16:03:03.389][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:03.391][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:03.392][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.393][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.394][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.396][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.398][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.399][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.402][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.404][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.405][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.406][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.408][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.409][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.420][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:03:03.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.449][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.450][private$selectFields]
biodb.TRACE[2024-09-07 16:03:03.451][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:03.452][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:03.453][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.455][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.456][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.459][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.461][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.463][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.464][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.465][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:03.466][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.468][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.470][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.471][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:03.472][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.477][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.482][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:03.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:03:03.488][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:03.489][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:03.500][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:03.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:03.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.504][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:03.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.509][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:03.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:03.518][biodb::testThat]
biodb.INFO [2024-09-07 16:03:03.519][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-09-07 16:03:03.521][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:03.522][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:03.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:03.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.530][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:03.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:03.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:03.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:03.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:03.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:03.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:03.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:03.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:03.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:03.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:03.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:03.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:03.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:03.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:03.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:03.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:03.721][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.DEBUG[2024-09-07 16:03:03.725][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:03.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5652f5994fce967a05a065a71bac3ed6".
biodb.TRACE[2024-09-07 16:03:03.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:03.797][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.content".
biodb.DEBUG[2024-09-07 16:03:04.873][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:04.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:04.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:04.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:04.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:04.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:04.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:04.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.893][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.898][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:04.899][private$selectFields]
biodb.TRACE[2024-09-07 16:03:04.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:04.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:04.902][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:04.903][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.905][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.907][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.908][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.910][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.912][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.913][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:04.914][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:04.915][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.917][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.919][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.920][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:04.921][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.926][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.931][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:03:04.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:04.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:04.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:04.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:04.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:04.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:04.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:04.951][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.960][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:04.961][private$selectFields]
biodb.TRACE[2024-09-07 16:03:04.963][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:04.964][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:04.965][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:04.966][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.967][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.970][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.971][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.972][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.975][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.976][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:04.977][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:04.978][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.979][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.982][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.983][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:04.984][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.989][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.994][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:04.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:04.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:04.999][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:03:05.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:05.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:05.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:05.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:05.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:05.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:05.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:05.014][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:05.019][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:05.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:05.024][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:05.025][private$selectFields]
biodb.TRACE[2024-09-07 16:03:05.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:05.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:05.029][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:05.030][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.031][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:05.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:05.035][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.036][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:05.039][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:05.040][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:05.041][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:05.042][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.044][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:05.046][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:05.047][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:05.049][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:05.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:05.054][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:05.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:05.058][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:05.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:05.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:05.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:03:05.065][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:05.067][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:05.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:05.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:05.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:05.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:05.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:05.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:05.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:05.089][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.DEBUG[2024-09-07 16:03:05.095][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:05.096][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:05.099][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.TRACE[2024-09-07 16:03:09.213][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911).
biodb.DEBUG[2024-09-07 16:03:14.833][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:14.836][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.content"
biodb.TRACE[2024-09-07 16:03:14.894][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.request"
biodb.DEBUG[2024-09-07 16:03:15.926][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:15.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:15.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:15.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:15.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:15.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:15.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:15.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:15.941][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:15.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:15.946][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:15.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:15.950][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:15.952][private$selectFields]
biodb.TRACE[2024-09-07 16:03:15.953][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:15.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:15.955][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:15.956][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.958][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:15.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:15.961][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.962][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:15.965][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:15.966][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:15.967][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:15.968][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.969][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:15.972][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:15.973][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:15.974][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:15.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:15.979][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:15.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:15.984][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:15.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:15.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:15.989][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:03:15.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:15.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:15.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:15.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:16.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:16.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:16.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:16.003][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.008][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.013][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:16.014][private$selectFields]
biodb.TRACE[2024-09-07 16:03:16.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:16.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:16.017][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:16.019][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.020][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.022][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.023][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.025][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.027][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.028][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:16.029][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:16.030][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.032][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.035][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:16.036][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.041][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.046][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:03:16.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:16.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:16.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:16.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:16.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:16.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:16.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:16.065][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.075][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:16.077][private$selectFields]
biodb.TRACE[2024-09-07 16:03:16.078][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:16.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:16.080][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:16.082][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.083][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.087][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.088][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.092][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:16.093][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:16.094][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.096][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.098][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.099][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:16.101][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.106][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.112][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:16.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:16.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:16.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:03:16.120][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:16.121][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:16.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:16.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:16.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:16.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:16.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:16.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:16.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:16.143][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.DEBUG[2024-09-07 16:03:16.148][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:16.149][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:16.152][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.TRACE[2024-09-07 16:03:20.501][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435).
biodb.DEBUG[2024-09-07 16:03:25.707][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:25.712][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.content"
biodb.TRACE[2024-09-07 16:03:25.774][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.request"
biodb.DEBUG[2024-09-07 16:03:26.801][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:26.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:26.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:26.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:26.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:26.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:26.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:26.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:26.816][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.821][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.826][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.827][private$selectFields]
biodb.TRACE[2024-09-07 16:03:26.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:26.829][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:26.831][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.832][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.833][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.836][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.837][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.838][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.840][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.842][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.843][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.844][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.845][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.848][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.849][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:26.850][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.855][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.860][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:03:26.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:26.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:26.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:26.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:26.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:26.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:26.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:26.880][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.890][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.891][private$selectFields]
biodb.TRACE[2024-09-07 16:03:26.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:26.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:26.894][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.896][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.897][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.899][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.900][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.902][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.904][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.905][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.906][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.908][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.909][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.911][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.912][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:26.914][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.919][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.923][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:03:26.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:26.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:26.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:26.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:26.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:26.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:26.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:26.943][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.948][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.953][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.954][private$selectFields]
biodb.TRACE[2024-09-07 16:03:26.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:26.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:26.958][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.959][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.960][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.964][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.965][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.969][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.970][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:26.971][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.973][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.975][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.976][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.982][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:26.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:26.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:26.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:03:26.994][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:26.995][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.011][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:27.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:27.025][biodb::testThat]
biodb.INFO [2024-09-07 16:03:27.026][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-09-07 16:03:27.028][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:27.029][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.037][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.042][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:27.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:27.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:27.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:27.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:27.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:27.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:27.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:27.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:27.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:27.159][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:03:27.164][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:27.166][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-09-07 16:03:27.168][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:27.201][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-09-07 16:03:28.231][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:28.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:28.246][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.250][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.255][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.256][private$selectFields]
biodb.TRACE[2024-09-07 16:03:28.258][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:28.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:28.260][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.261][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.262][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.266][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.267][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.271][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.272][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.273][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.274][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.276][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.278][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:28.279][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.289][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.294][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:03:28.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:28.308][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.313][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.318][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.319][private$selectFields]
biodb.TRACE[2024-09-07 16:03:28.320][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:28.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:28.322][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.324][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.325][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.327][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.328][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.330][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.332][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.333][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.335][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.336][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.337][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.339][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.341][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:28.342][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.357][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:03:28.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:28.372][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.381][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.383][private$selectFields]
biodb.TRACE[2024-09-07 16:03:28.384][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:28.385][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:28.386][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.387][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.389][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.391][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.392][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.394][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.396][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.397][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.399][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:28.400][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.401][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.403][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.570][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:28.572][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.576][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.581][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:28.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:28.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:03:28.587][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:28.589][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:28.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:28.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:28.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:28.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:28.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:28.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:28.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:28.606][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:03:28.610][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:28.612][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-09-07 16:03:28.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:28.645][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-09-07 16:03:29.641][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:29.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:29.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:29.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:29.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:29.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:29.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:29.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:29.656][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.661][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.666][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.667][private$selectFields]
biodb.TRACE[2024-09-07 16:03:29.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:29.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:29.671][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.672][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.673][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.675][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.677][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.678][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.680][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.681][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.683][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.684][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.685][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.687][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.689][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:29.690][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.695][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.699][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:03:29.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:29.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:29.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:29.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:29.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:29.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:29.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:29.719][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.728][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.729][private$selectFields]
biodb.TRACE[2024-09-07 16:03:29.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:29.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:29.733][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.734][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.735][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.737][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.739][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.740][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.742][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.743][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.745][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.746][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.747][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.749][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.750][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:03:29.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:29.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:29.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:29.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:29.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:29.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:29.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:29.781][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.786][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.790][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.791][private$selectFields]
biodb.TRACE[2024-09-07 16:03:29.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:29.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:29.795][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.796][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.797][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.801][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.802][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.805][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.806][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.807][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:29.808][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.810][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.812][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.813][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.819][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.824][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:29.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:29.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:03:29.831][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:29.832][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:29.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:29.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:29.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:29.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:29.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:29.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:29.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:29.850][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:03:29.854][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:03:29.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-09-07 16:03:29.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:03:29.889][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-09-07 16:03:30.930][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:30.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:30.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:30.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:30.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:30.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:30.945][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.954][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:30.955][private$selectFields]
biodb.TRACE[2024-09-07 16:03:30.956][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:30.958][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:30.959][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:30.960][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.961][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.964][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.965][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.966][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.970][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:30.971][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:30.972][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.973][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.975][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.977][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:30.978][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.987][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:30.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:30.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:03:30.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:30.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:30.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.011][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.016][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:31.017][private$selectFields]
biodb.TRACE[2024-09-07 16:03:31.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:31.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:31.021][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:31.022][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.023][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.025][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.027][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.028][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.030][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.031][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:31.033][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:31.034][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.035][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.037][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.038][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:31.040][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.044][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:03:31.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:31.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.073][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.078][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:31.079][private$selectFields]
biodb.TRACE[2024-09-07 16:03:31.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:31.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:31.082][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:31.084][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.085][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.087][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.088][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.090][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.092][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.093][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:31.094][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:31.096][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.097][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.099][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.100][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:31.101][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.106][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:31.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:03:31.117][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:31.119][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:03:31.143][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.148][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:31.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:31.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.153][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:03:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.161][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:03:31.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:03:31.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.165][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.166][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.167][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.170][ef$get] fields variable is a list.
biodb.INFO [2024-09-07 16:03:31.172][biodb::testThat]
biodb.INFO [2024-09-07 16:03:31.173][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-09-07 16:03:31.174][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:03:31.175][biodb::testThat]
biodb.TRACE[2024-09-07 16:03:31.178][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:31.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.183][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.188][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:03:31.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:03:31.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:03:31.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:31.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:03:31.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:31.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:03:31.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:31.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:31.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:31.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:31.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:31.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:31.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:31.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:03:31.289][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:31.291][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:31.293][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.TRACE[2024-09-07 16:03:36.679][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11).
biodb.DEBUG[2024-09-07 16:03:42.209][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:42.212][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content"
biodb.TRACE[2024-09-07 16:03:42.277][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.request"
biodb.DEBUG[2024-09-07 16:03:43.289][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:43.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.315][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.316][private$selectFields]
biodb.TRACE[2024-09-07 16:03:43.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:43.318][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:43.319][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.321][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.322][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.324][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.325][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.327][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.329][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.330][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.331][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.333][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.334][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.336][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.338][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:43.339][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.344][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.354][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:03:43.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:43.368][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.374][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.379][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.380][private$selectFields]
biodb.TRACE[2024-09-07 16:03:43.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:43.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:43.383][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.385][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.386][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.390][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.391][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.395][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.396][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.397][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.399][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.402][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:43.404][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.414][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:03:43.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:43.433][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.443][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.444][private$selectFields]
biodb.TRACE[2024-09-07 16:03:43.445][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:43.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:43.448][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.449][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.451][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.453][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.454][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.455][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.458][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.459][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.460][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:43.461][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.463][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.465][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.466][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:43.468][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:43.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:03:43.484][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:43.485][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:43.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:43.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:43.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:43.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:43.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:43.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:43.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:43.504][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:03:43.508][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:43.510][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:43.512][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.TRACE[2024-09-07 16:03:47.783][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11).
biodb.DEBUG[2024-09-07 16:03:53.296][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:03:53.301][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content"
biodb.TRACE[2024-09-07 16:03:53.401][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.request"
biodb.DEBUG[2024-09-07 16:03:54.416][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:03:54.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:54.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:54.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:54.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:54.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:54.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:54.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:54.431][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.441][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.442][private$selectFields]
biodb.TRACE[2024-09-07 16:03:54.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:54.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:54.446][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.447][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.448][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.450][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.452][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.453][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.456][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.458][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.459][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.460][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.462][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.464][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:54.465][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.480][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:03:54.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:54.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:54.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:54.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:54.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:54.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:54.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.504][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.505][private$selectFields]
biodb.TRACE[2024-09-07 16:03:54.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:54.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:54.508][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.509][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.511][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.513][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.514][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.516][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.518][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.519][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.520][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.522][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.523][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.525][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.527][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:54.528][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.538][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:03:54.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:54.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:54.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:54.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:54.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:54.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:54.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:03:54.558][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.567][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.568][private$selectFields]
biodb.TRACE[2024-09-07 16:03:54.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:03:54.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:03:54.572][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.573][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.575][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.577][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.578][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.579][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.583][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.584][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:03:54.585][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.587][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.589][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.590][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:03:54.592][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.597][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.602][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:03:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:03:54.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:03:54.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:03:54.608][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:03:54.609][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:03:54.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:03:54.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:03:54.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:03:54.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:03:54.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:03:54.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:03:54.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:03:54.627][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:03:54.632][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:03:54.633][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:03:54.635][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.TRACE[2024-09-07 16:03:58.802][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11).
biodb.DEBUG[2024-09-07 16:04:04.208][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:04.213][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content"
biodb.TRACE[2024-09-07 16:04:04.274][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.request"
biodb.DEBUG[2024-09-07 16:04:05.312][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:05.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:05.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:05.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:05.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:05.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:05.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:05.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:05.328][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.333][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.338][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.339][private$selectFields]
biodb.TRACE[2024-09-07 16:04:05.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:05.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:05.343][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.345][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.346][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.348][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.349][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.351][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.353][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.355][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.356][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.357][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.358][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.361][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.362][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:05.363][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.368][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.373][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.378][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:05.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:05.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:05.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:05.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:05.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:05.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:05.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.398][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.403][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.404][private$selectFields]
biodb.TRACE[2024-09-07 16:04:05.405][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:05.406][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:05.407][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.409][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.410][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.412][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.414][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.415][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.417][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.418][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.420][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.421][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.422][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.424][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.426][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:05.427][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.432][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:05.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:05.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:05.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:05.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:05.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:05.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:05.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.461][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.466][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.467][private$selectFields]
biodb.TRACE[2024-09-07 16:04:05.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:05.470][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:05.471][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.472][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.473][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.476][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.477][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.478][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.481][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.482][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.483][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:05.484][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.486][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.488][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.489][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:05.490][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.495][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.500][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:05.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:05.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:05.506][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:05.507][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:05.508][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:05.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:05.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:05.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:05.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:05.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:05.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:05.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:05.554][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:05.558][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:05.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-09-07 16:04:05.561][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:05.593][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-09-07 16:04:06.630][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:06.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:06.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:06.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:06.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:06.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:06.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:06.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:06.646][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.655][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.657][private$selectFields]
biodb.TRACE[2024-09-07 16:04:06.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:06.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:06.660][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.661][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.663][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.666][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.667][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.670][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.671][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.672][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.673][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.674][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.678][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:06.679][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.684][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:06.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:06.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:06.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:06.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:06.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:06.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:06.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:06.708][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.713][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.717][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.718][private$selectFields]
biodb.TRACE[2024-09-07 16:04:06.720][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:06.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:06.722][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.723][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.724][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.727][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.728][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.729][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.731][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.733][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.734][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.735][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.736][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.738][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.740][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:06.741][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.746][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.750][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:06.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:06.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:06.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:06.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:06.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:06.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:06.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:06.770][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.779][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.780][private$selectFields]
biodb.TRACE[2024-09-07 16:04:06.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:06.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:06.784][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.785][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.786][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.789][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.790][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.791][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.793][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.795][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.796][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:06.797][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.798][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.801][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.802][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:06.803][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.808][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.813][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:06.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:06.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:06.818][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:06.819][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:06.820][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:06.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:06.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:06.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:06.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:06.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:06.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:06.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:06.838][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:06.842][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:06.844][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-09-07 16:04:06.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:06.877][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-09-07 16:04:07.919][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:07.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:07.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:07.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:07.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:07.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:07.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:07.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:07.934][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:07.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:07.944][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:07.945][private$selectFields]
biodb.TRACE[2024-09-07 16:04:07.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:07.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:07.948][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:07.949][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.951][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:07.953][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:07.954][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.955][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:07.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:07.959][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:07.960][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:07.961][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.963][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:07.965][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:07.966][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:07.967][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:07.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:07.972][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:07.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:07.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:07.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:07.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:07.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:07.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:07.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:07.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:07.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:07.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:07.996][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:07.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.001][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.006][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:08.007][private$selectFields]
biodb.TRACE[2024-09-07 16:04:08.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:08.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:08.010][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:08.011][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.013][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.015][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.016][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.017][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.020][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.021][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:08.022][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:08.023][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.024][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.027][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.028][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:08.029][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.034][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.039][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:08.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:08.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:08.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:08.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:08.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:08.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:08.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:08.058][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.063][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.068][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:08.069][private$selectFields]
biodb.TRACE[2024-09-07 16:04:08.070][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:08.071][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:08.072][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:08.074][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.075][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.077][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.078][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.080][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.082][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.083][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:08.084][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:08.086][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.087][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.089][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.090][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:08.092][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.096][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:08.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:08.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:08.108][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:08.109][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:08.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:08.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:08.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:08.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:08.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:08.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:08.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:08.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:08.131][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:08.132][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-09-07 16:04:08.134][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:08.165][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-09-07 16:04:09.203][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:09.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:09.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:09.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:09.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:09.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:09.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:09.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:09.218][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.223][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.227][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.228][private$selectFields]
biodb.TRACE[2024-09-07 16:04:09.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:09.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:09.232][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.233][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.234][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.237][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.238][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.239][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.241][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.243][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.244][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.245][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.246][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.250][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:09.251][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.256][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.260][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.266][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:09.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:09.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:09.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:09.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:09.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:09.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:09.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:09.280][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.289][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.290][private$selectFields]
biodb.TRACE[2024-09-07 16:04:09.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:09.293][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:09.294][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.295][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.296][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.298][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.300][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.301][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.303][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.304][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.306][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.307][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.308][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.310][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.312][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:09.313][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.318][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.322][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:09.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:09.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:09.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:09.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:09.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:09.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:09.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:09.342][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.347][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.351][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.352][private$selectFields]
biodb.TRACE[2024-09-07 16:04:09.354][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:09.355][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:09.356][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.357][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.358][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.361][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.362][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.363][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.366][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.367][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.368][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:09.369][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.370][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.373][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.374][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:09.375][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.381][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.386][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:09.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:09.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:09.393][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:09.394][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:09.395][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:09.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:09.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:09.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:09.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:09.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:09.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:09.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:09.439][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:04:09.444][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:09.445][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:09.448][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.TRACE[2024-09-07 16:04:13.415][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11).
biodb.DEBUG[2024-09-07 16:04:18.697][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:18.699][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content"
biodb.TRACE[2024-09-07 16:04:18.763][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.request"
biodb.DEBUG[2024-09-07 16:04:19.788][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:19.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:19.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:19.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:19.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:19.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:19.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:19.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.808][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.813][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.814][private$selectFields]
biodb.TRACE[2024-09-07 16:04:19.816][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:19.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:19.818][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.819][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.821][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.823][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.824][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.825][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.828][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.829][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.830][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.831][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.833][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.835][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.836][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:19.837][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.842][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.847][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.852][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:19.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:19.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:19.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:19.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:19.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:19.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:19.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:19.867][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.871][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.876][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.877][private$selectFields]
biodb.TRACE[2024-09-07 16:04:19.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:19.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:19.881][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.882][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.883][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.886][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.887][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.888][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.891][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.892][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.893][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.894][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.895][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.898][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.899][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:19.900][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.905][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.910][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.915][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:19.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:19.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:19.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:19.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:19.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:19.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:19.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:19.930][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.935][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.940][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.941][private$selectFields]
biodb.TRACE[2024-09-07 16:04:19.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:19.943][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:19.944][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.946][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.947][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.949][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.951][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.952][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.954][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.956][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.957][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:19.958][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.960][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.962][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.963][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:19.965][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.970][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.975][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:19.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:19.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:19.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:19.982][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:19.983][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:19.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:19.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:19.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:19.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:19.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:19.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:19.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:20.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:04:20.007][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:20.008][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:20.010][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.TRACE[2024-09-07 16:04:24.223][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11).
biodb.DEBUG[2024-09-07 16:04:29.596][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:29.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content"
biodb.TRACE[2024-09-07 16:04:29.659][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.request"
biodb.DEBUG[2024-09-07 16:04:30.672][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:30.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.688][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.693][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.697][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.698][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.700][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.701][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.702][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.703][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.704][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.707][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.708][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.709][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.711][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.713][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.714][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.715][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.716][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.719][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.720][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:30.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.736][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:30.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.750][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.759][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.761][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.764][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.765][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.766][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.769][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.770][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.771][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.774][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.775][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.776][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.777][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.778][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.781][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.782][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.793][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:30.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.822][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.823][private$selectFields]
biodb.TRACE[2024-09-07 16:04:30.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:30.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:30.826][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.828][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.829][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.831][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.832][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.834][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.836][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.837][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.838][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:30.840][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.841][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.843][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.845][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:30.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.851][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:30.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:30.862][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:30.864][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:30.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:30.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:30.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:30.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:30.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:30.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:30.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:30.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:04:30.886][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-09-07 16:04:30.887][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-09-07 16:04:30.890][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.TRACE[2024-09-07 16:04:34.831][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11).
biodb.DEBUG[2024-09-07 16:04:40.206][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-09-07 16:04:40.208][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content"
biodb.TRACE[2024-09-07 16:04:40.274][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.request"
biodb.DEBUG[2024-09-07 16:04:41.291][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:41.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:41.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:41.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:41.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:41.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:41.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:41.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:41.306][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.311][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.316][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.317][private$selectFields]
biodb.TRACE[2024-09-07 16:04:41.318][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:41.319][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:41.320][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.322][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.323][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.325][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.326][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.328][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.330][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.331][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.332][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.333][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.335][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.337][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.338][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.344][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.349][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.354][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:41.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:41.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:41.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:41.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:41.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:41.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:41.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.374][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.380][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.381][private$selectFields]
biodb.TRACE[2024-09-07 16:04:41.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:41.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:41.384][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.386][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.387][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.389][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.390][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.392][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.394][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.395][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.396][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.398][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.399][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.403][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:41.404][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:41.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:41.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:41.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:41.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:41.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:41.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:41.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:41.433][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.438][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.443][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.444][private$selectFields]
biodb.TRACE[2024-09-07 16:04:41.445][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:41.446][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:41.448][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.449][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.450][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.453][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.454][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.455][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.457][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.459][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.460][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:41.461][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.462][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.465][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.467][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:41.469][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:41.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:41.485][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:41.486][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:41.487][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:41.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:41.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:41.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:41.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:41.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:41.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:41.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:41.548][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:04:41.553][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:41.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "856708e2bbeea806179c75604ab7003a".
biodb.TRACE[2024-09-07 16:04:41.557][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:41.590][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content".
biodb.DEBUG[2024-09-07 16:04:42.614][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:42.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:42.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:42.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:42.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:42.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:42.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:42.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:42.630][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.639][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.640][private$selectFields]
biodb.TRACE[2024-09-07 16:04:42.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:42.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:42.644][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.645][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.646][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.649][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.650][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.651][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.654][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.655][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.656][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.657][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.658][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.661][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.662][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:42.663][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.674][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:42.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:42.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:42.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:42.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:42.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:42.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:42.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:42.694][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.705][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.706][private$selectFields]
biodb.TRACE[2024-09-07 16:04:42.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:42.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:42.710][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.711][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.712][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.715][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.716][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.717][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.720][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.721][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.722][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.724][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.725][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.727][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.729][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.745][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:42.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:42.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:42.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:42.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:42.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:42.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:42.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.770][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.771][private$selectFields]
biodb.TRACE[2024-09-07 16:04:42.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:42.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:42.774][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.776][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.777][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.779][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.781][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.782][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.785][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.787][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:42.788][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.789][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.792][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.793][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.804][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:42.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:42.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:42.811][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:42.812][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:42.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:42.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:42.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:42.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:42.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:42.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:42.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:42.830][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:04:42.835][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:42.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "213dc74fea82b4e00a3de9c6296d60ac".
biodb.TRACE[2024-09-07 16:04:42.838][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:42.870][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content".
biodb.DEBUG[2024-09-07 16:04:43.889][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:43.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:43.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:43.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:43.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:43.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:43.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:43.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:43.904][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.909][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.913][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:43.915][private$selectFields]
biodb.TRACE[2024-09-07 16:04:43.916][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:43.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:43.918][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:43.919][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.921][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.923][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.924][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.926][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.928][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.929][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:43.931][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:43.932][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.933][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.936][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.937][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.948][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.953][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:43.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:43.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:43.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:43.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:43.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:43.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:43.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:43.967][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.972][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.977][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:43.978][private$selectFields]
biodb.TRACE[2024-09-07 16:04:43.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:43.980][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:43.981][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:43.983][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.984][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.987][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.989][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.992][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:43.993][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:43.995][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.996][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:43.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:43.998][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:43.999][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:44.001][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.010][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:44.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:44.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:44.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:44.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:44.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:44.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:44.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.039][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:44.041][private$selectFields]
biodb.TRACE[2024-09-07 16:04:44.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:44.043][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:44.044][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:44.045][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.047][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.049][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.050][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.051][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.054][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.055][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:44.056][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:44.057][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.059][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.061][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.062][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.073][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:44.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:44.078][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:44.080][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:44.081][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:44.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:44.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:44.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:44.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:44.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:44.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:44.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:44.098][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:04:44.103][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:44.104][cch$loadFileContent] Trying to load 1 files from cache: [1]: "599a9d63e9d10326d614f066b3a2769e".
biodb.TRACE[2024-09-07 16:04:44.106][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:44.138][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content".
biodb.DEBUG[2024-09-07 16:04:45.145][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:45.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.160][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.165][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.170][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.171][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.174][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.175][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.177][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.179][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.180][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.181][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.184][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.185][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.186][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.187][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.188][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.191][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.192][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:45.193][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.203][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:45.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.227][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.231][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.233][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.235][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.236][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.237][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.238][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.241][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.242][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.243][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.245][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.247][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.248][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.249][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.250][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.253][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.254][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:45.255][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.260][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.264][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.270][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:45.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:45.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.293][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.294][private$selectFields]
biodb.TRACE[2024-09-07 16:04:45.295][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:45.296][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:45.298][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.299][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.300][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.302][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.304][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.305][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.307][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.308][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.310][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:45.311][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.312][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.314][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.315][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:45.317][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.321][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:45.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:45.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:45.332][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:45.333][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:45.334][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:45.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:45.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:45.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:45.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:45.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:45.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:45.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:45.375][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:45.380][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:45.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-09-07 16:04:45.383][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:45.430][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-09-07 16:04:46.447][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:46.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.462][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.471][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.472][private$selectFields]
biodb.TRACE[2024-09-07 16:04:46.473][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:46.474][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:46.476][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.477][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.478][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.480][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.481][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.483][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.485][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.486][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.487][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.489][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.490][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.492][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.493][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:46.495][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.509][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:46.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.523][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.528][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.533][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.534][private$selectFields]
biodb.TRACE[2024-09-07 16:04:46.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:46.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:46.537][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.538][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.540][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.542][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.543][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.544][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.547][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.548][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.549][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.550][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.551][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.555][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:46.556][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.561][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.566][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.571][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:46.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.595][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.596][private$selectFields]
biodb.TRACE[2024-09-07 16:04:46.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:46.598][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:46.599][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.601][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.602][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.604][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.605][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.607][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.609][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.610][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.612][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:46.613][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.614][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.618][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:46.619][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.629][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:46.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:46.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:46.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:46.635][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:46.637][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:46.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:46.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:46.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:46.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:46.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:46.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:46.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:46.655][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:46.659][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:46.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-09-07 16:04:46.662][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:46.693][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-09-07 16:04:47.749][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:47.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.764][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.774][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.775][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.779][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.780][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.781][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.784][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.785][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.786][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.788][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.790][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.791][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.792][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.793][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.796][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.797][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:47.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.828][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.833][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.838][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.839][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.842][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.843][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.845][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.847][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.848][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.850][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.852][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.853][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.854][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.856][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.857][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.859][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.860][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:47.862][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:47.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:47.891][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.902][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.903][private$selectFields]
biodb.TRACE[2024-09-07 16:04:47.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:47.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:47.906][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.908][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.909][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.911][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.912][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.914][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.916][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.918][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.919][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:47.920][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.921][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.924][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.925][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.932][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:47.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:47.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:47.942][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:47.943][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:47.944][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:47.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:47.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:47.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:47.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:47.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:47.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:47.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:47.963][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:47.968][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:47.969][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-09-07 16:04:47.971][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:48.002][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-09-07 16:04:49.032][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:49.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:49.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:49.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:49.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:49.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:49.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:49.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:49.047][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.052][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.057][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.058][private$selectFields]
biodb.TRACE[2024-09-07 16:04:49.059][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:49.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:49.061][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.063][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.064][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.066][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.067][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.069][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.071][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.072][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.073][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.075][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.076][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.078][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.079][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:49.081][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.091][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:49.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:49.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:49.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:49.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:49.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:49.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:49.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.115][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.120][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.121][private$selectFields]
biodb.TRACE[2024-09-07 16:04:49.122][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:49.124][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:49.125][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.126][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.127][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.131][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.132][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.135][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.136][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.137][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.138][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.140][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.142][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.143][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:49.144][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.149][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.154][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:49.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:49.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:49.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:49.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:49.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:49.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:49.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.185][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.186][private$selectFields]
biodb.TRACE[2024-09-07 16:04:49.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:49.188][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:49.189][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.191][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.192][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.194][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.195][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.197][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.199][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.200][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.202][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:49.203][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.204][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.206][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.208][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.219][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:49.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:49.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:49.225][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:49.226][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:49.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:49.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:49.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:49.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:49.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:49.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:49.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:49.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:04:49.274][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:49.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ec7b47285bd6f593d724b6f7745f0646".
biodb.TRACE[2024-09-07 16:04:49.277][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:49.308][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content".
biodb.DEBUG[2024-09-07 16:04:50.322][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:50.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:50.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:50.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:50.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:50.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:50.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:50.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:50.338][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.342][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.347][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.348][private$selectFields]
biodb.TRACE[2024-09-07 16:04:50.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:50.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:50.352][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.353][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.355][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.357][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.358][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.359][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.362][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.363][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.364][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.365][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.367][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.369][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.370][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.376][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.381][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.387][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:50.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:50.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:50.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:50.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:50.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:50.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:50.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.406][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.411][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.412][private$selectFields]
biodb.TRACE[2024-09-07 16:04:50.413][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:50.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:50.416][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.417][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.418][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.422][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.423][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.427][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.428][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.429][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.431][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.433][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.434][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:50.435][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.445][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:50.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:50.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:50.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:50.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:50.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:50.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:50.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:50.465][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.470][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.475][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.476][private$selectFields]
biodb.TRACE[2024-09-07 16:04:50.478][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:50.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:50.480][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.481][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.483][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.485][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.486][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.487][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.490][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.491][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.492][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:50.493][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.495][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.497][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.498][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:50.500][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.505][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.510][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:50.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:50.516][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:50.517][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:50.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:50.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:50.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:50.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:50.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:50.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:50.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:50.535][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:04:50.540][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:50.541][cch$loadFileContent] Trying to load 1 files from cache: [1]: "236b5f2d20f6da60d3d5e29141c3c6fd".
biodb.TRACE[2024-09-07 16:04:50.543][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:50.748][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content".
biodb.DEBUG[2024-09-07 16:04:51.752][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:51.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:51.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:51.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:51.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:51.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:51.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:51.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.778][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.779][private$selectFields]
biodb.TRACE[2024-09-07 16:04:51.780][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:51.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:51.782][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.784][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.785][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.787][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.789][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.790][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.792][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.793][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.795][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.796][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.797][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.799][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.801][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:51.802][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.812][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.818][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:51.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:51.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:51.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:51.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:51.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:51.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:51.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.843][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.844][private$selectFields]
biodb.TRACE[2024-09-07 16:04:51.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:51.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:51.847][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.849][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.850][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.852][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.853][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.855][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.857][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.858][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.859][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.861][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.862][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.864][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.866][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:51.867][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.872][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:51.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:51.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:51.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:51.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:51.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:51.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:51.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:51.902][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.912][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.914][private$selectFields]
biodb.TRACE[2024-09-07 16:04:51.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:51.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:51.917][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.919][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.920][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.922][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.924][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.925][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.927][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.929][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.930][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:51.931][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.933][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.935][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.937][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:51.938][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.949][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:51.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:51.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:51.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:51.959][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:51.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:51.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:51.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:51.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:51.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:51.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:51.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:51.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-09-07 16:04:51.982][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:51.984][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c0ec3345a6e512e30aa3c52ef1c02f40".
biodb.TRACE[2024-09-07 16:04:51.986][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:52.017][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content".
biodb.DEBUG[2024-09-07 16:04:53.053][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:53.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:53.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:53.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:53.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:53.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:53.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:53.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:53.068][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.072][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.077][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.078][private$selectFields]
biodb.TRACE[2024-09-07 16:04:53.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:53.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:53.082][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.083][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.084][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.087][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.088][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.089][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.091][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.093][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.094][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.095][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.096][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.098][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.100][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:53.101][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.111][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-09-07 16:04:53.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:53.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:53.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:53.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:53.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:53.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:53.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.139][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.141][private$selectFields]
biodb.TRACE[2024-09-07 16:04:53.142][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:53.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:53.144][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.145][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.146][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.149][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.150][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.151][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.154][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.155][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.156][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.157][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.158][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.161][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.162][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:53.163][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-09-07 16:04:53.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:53.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:53.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:53.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:53.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:53.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:53.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:53.192][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.202][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.203][private$selectFields]
biodb.TRACE[2024-09-07 16:04:53.204][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:53.205][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:53.207][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.208][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.209][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.212][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.213][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.214][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.216][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.218][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.219][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-09-07 16:04:53.220][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.221][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.224][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.225][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-09-07 16:04:53.226][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:53.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-09-07 16:04:53.242][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:53.243][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:04:53.267][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:53.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:04:53.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:04:53.286][biodb::testThat]
biodb.INFO [2024-09-07 16:04:53.288][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-09-07 16:04:53.289][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-09-07 16:04:53.290][biodb::testThat]
biodb.TRACE[2024-09-07 16:04:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:53.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:53.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.299][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:53.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:53.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.304][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-09-07 16:04:53.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-09-07 16:04:53.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:53.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:53.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:53.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-09-07 16:04:53.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:53.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:53.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-09-07 16:04:53.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:53.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:53.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:53.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:53.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:53.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:53.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:53.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:53.427][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:53.429][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-09-07 16:04:53.431][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:53.462][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-09-07 16:04:54.474][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:54.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:54.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:54.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:54.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:54.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:54.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:54.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.528][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.567][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:54.568][private$selectFields]
biodb.TRACE[2024-09-07 16:04:54.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:54.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:54.572][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:54.573][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.577][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.583][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.584][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.587][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.588][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.591][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.593][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.594][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.601][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.602][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.604][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.611][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.612][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.616][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.621][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.622][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.623][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.626][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.627][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.632][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.633][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.635][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.637][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.640][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.642][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.645][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.650][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.651][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:54.653][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:54.654][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.658][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.662][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.664][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.665][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.667][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.669][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.672][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.673][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.675][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.677][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.682][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.683][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.687][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.692][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.693][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:04:54.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.766][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-09-07 16:04:54.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:54.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:54.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:54.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:54.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:54.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:54.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:54.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.895][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.899][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.934][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:54.935][private$selectFields]
biodb.TRACE[2024-09-07 16:04:54.936][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:54.937][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:54.938][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:54.940][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.943][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.948][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.949][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.951][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.953][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.954][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.958][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.959][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.960][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.963][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.965][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:54.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.968][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.969][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:54.970][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:54.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.972][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:54.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.977][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:54.980][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:54.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.982][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.983][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:54.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.987][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.988][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.990][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:54.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.992][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.993][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:54.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:54.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:54.997][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:54.998][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:54.999][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.004][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.008][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.012][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.013][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.014][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.018][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:55.019][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:55.020][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.024][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.029][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.030][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.031][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.034][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.035][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.036][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.038][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.040][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.041][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.043][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.045][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.046][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.048][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.049][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.053][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.058][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.059][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:04:55.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-09-07 16:04:55.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:55.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:55.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:55.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:55.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:55.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:55.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:55.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.252][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.291][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:55.292][private$selectFields]
biodb.TRACE[2024-09-07 16:04:55.293][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:55.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:55.295][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:55.297][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.300][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.301][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.305][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.306][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.307][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.310][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.311][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.312][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.315][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.316][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.317][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.319][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.322][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.324][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.325][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.329][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.330][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.334][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.335][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.338][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.339][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:55.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.343][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.344][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.346][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.348][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.349][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.353][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.354][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.355][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.357][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.362][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.363][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.367][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.372][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.373][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:55.374][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:55.375][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.379][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.380][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.381][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.384][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.385][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.390][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.391][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.393][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.398][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.399][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.403][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.408][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.409][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:04:55.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:55.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:55.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:55.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:55.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.459][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.464][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:55.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:55.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:55.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:55.518][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-09-07 16:04:55.519][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:55.520][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:55.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:55.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:55.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:55.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:55.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:55.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:55.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:55.539][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:55.544][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:55.545][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-09-07 16:04:55.547][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:55.577][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-09-07 16:04:56.621][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:56.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:56.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:56.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:56.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:56.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:56.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:56.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:56.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.676][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.681][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.715][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:56.716][private$selectFields]
biodb.TRACE[2024-09-07 16:04:56.717][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:56.718][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:56.720][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:56.721][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.725][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.729][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.731][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.732][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.734][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.736][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.737][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.739][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.741][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.742][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.744][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.749][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.750][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.754][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.759][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.760][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.764][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.768][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.770][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.771][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.773][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.775][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.778][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.780][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.781][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.783][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.788][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.790][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.791][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.793][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.795][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.796][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.798][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.800][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:56.801][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:56.802][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.806][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.811][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.812][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.813][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.815][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.817][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.818][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.820][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.821][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.823][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.825][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.830][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.831][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.835][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.836][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.837][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.840][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.841][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:04:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:56.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:56.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.903][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.908][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.913][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:56.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:56.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:56.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:56.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:56.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.969][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-09-07 16:04:56.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:56.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:56.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:56.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:56.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:56.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:56.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:56.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:56.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:56.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:56.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:56.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.032][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.037][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.071][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:57.072][private$selectFields]
biodb.TRACE[2024-09-07 16:04:57.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:57.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:57.076][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:57.077][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.080][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.081][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.085][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.086][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.087][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.090][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.091][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.095][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.096][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.097][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.099][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.100][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.104][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.105][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.109][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.114][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.115][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.118][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.123][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.124][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.125][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.128][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.129][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.133][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.134][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.135][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.137][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.139][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.142][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.143][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.147][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.152][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.153][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:57.154][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:57.155][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.159][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.164][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.165][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.166][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.169][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.170][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.173][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.174][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.176][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.183][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.184][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.194][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:04:57.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.259][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.264][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-09-07 16:04:57.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:57.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:57.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:57.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:57.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:57.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:57.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.386][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.391][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.425][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:57.426][private$selectFields]
biodb.TRACE[2024-09-07 16:04:57.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:57.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:57.430][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:57.431][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.441][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.442][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.444][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.446][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.449][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.450][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.452][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.454][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.459][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.460][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.461][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.464][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.469][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.470][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.474][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:57.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.478][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.480][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.481][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.483][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.484][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.488][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.489][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.491][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.493][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.494][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.495][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.498][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.499][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.503][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.505][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.507][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.509][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:57.510][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:57.511][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.515][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.516][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.517][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.520][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.521][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.525][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.526][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.527][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.529][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.531][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.534][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.535][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.540][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.542][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.544][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.545][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:04:57.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:57.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:57.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:57.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.592][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.597][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.602][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:57.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:57.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:57.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:57.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:57.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:57.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:57.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-09-07 16:04:57.658][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:57.659][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:57.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:57.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:57.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:57.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:57.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:57.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:57.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:57.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:57.684][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:57.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-09-07 16:04:57.687][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:57.718][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-09-07 16:04:58.737][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:04:58.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:58.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:58.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:58.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:58.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:58.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:58.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:58.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:58.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.797][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.832][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:58.833][private$selectFields]
biodb.TRACE[2024-09-07 16:04:58.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:58.835][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:58.836][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:58.838][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.841][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.846][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.847][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.849][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.851][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.853][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:58.854][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:58.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.856][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.857][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.859][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.861][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.866][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.867][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:58.868][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:58.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.871][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.876][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.877][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.881][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.885][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.887][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.888][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.890][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.892][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:58.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:58.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.895][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.896][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.898][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.900][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.905][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.906][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:58.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:58.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.910][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.915][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.916][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:58.917][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:58.919][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.922][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.927][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.928][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.930][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.932][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.933][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:58.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:58.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.937][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.938][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.940][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:58.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.942][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.945][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:58.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.947][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.949][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:58.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:58.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.952][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:58.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.957][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.958][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:04:58.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:58.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:58.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:58.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:58.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:58.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.015][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.020][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.025][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.030][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-09-07 16:04:59.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:59.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:59.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:59.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:59.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:59.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:59.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:59.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.157][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.162][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.196][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:59.198][private$selectFields]
biodb.TRACE[2024-09-07 16:04:59.199][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:59.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:59.201][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:59.203][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.206][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.211][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.212][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.214][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.216][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.217][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.221][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.222][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.223][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.226][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.230][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.232][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.235][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.238][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.240][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.241][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.243][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.245][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.250][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.251][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.252][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.255][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.256][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.260][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.261][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.262][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.265][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.269][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.271][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.274][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.276][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.277][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.279][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.280][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:59.282][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:59.283][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.287][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.292][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.293][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.294][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.296][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.298][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.301][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.303][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.304][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.306][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.309][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.311][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.312][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.316][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.321][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.322][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:04:59.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.384][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.389][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-09-07 16:04:59.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:59.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:59.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:59.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:59.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:59.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:59.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:04:59.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.516][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.521][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.554][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:59.555][private$selectFields]
biodb.TRACE[2024-09-07 16:04:59.557][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:04:59.558][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:04:59.559][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:59.560][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.564][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.566][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.568][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.569][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.571][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.573][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.574][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.578][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.579][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.580][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.582][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.583][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.587][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.588][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.592][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.596][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.598][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.601][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:04:59.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.606][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.607][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.608][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.610][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.612][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.615][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.616][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.618][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.620][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.625][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.626][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.629][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.634][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.635][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:59.636][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:04:59.638][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.641][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.642][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.644][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.646][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.647][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.652][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.653][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.655][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.660][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.661][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.665][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.669][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.671][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:04:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:04:59.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:04:59.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:04:59.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:04:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:04:59.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.715][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.725][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:04:59.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:04:59.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:04:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:04:59.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:04:59.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:04:59.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:04:59.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-09-07 16:04:59.779][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:04:59.780][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:04:59.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:04:59.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:04:59.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:04:59.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:04:59.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:04:59.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:04:59.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:04:59.805][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:04:59.809][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:04:59.811][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-09-07 16:04:59.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:04:59.843][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-09-07 16:05:00.859][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:00.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:00.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:00.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:00.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:00.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:00.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:00.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:00.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:00.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:00.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:00.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:00.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:00.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:00.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:00.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:00.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.915][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:00.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:00.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.920][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:00.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:00.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:00.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:00.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:00.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:00.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:00.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:00.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:00.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:00.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:00.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:00.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:00.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:00.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:00.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.961][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:00.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:00.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.966][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:00.967][private$selectFields]
biodb.TRACE[2024-09-07 16:05:00.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:00.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:00.971][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:00.972][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:00.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:00.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.976][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.977][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.978][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:00.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.981][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.982][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:00.984][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:00.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.986][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.987][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:00.989][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:00.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.991][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.992][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:00.994][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:00.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:00.996][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:00.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:00.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.001][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.002][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.003][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.006][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.008][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.012][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.013][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.017][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.021][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.027][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.028][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.030][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.032][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.035][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.037][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.038][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.040][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.042][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.043][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.045][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.047][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.051][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.056][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.057][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.058][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.061][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.062][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:01.063][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:01.065][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.069][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.074][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.075][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.076][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.079][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.080][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.084][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.085][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.086][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.088][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.093][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.094][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.098][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.103][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.104][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:05:01.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.171][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.176][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.245][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-09-07 16:05:01.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:01.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:01.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:01.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:01.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:01.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:01.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.299][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.339][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.344][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.349][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:01.350][private$selectFields]
biodb.TRACE[2024-09-07 16:05:01.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:01.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:01.354][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:01.355][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.359][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.364][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.365][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.366][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.368][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.370][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.373][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.374][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.376][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.378][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.379][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.381][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.383][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.384][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.388][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.389][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.390][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.392][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.394][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.395][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.397][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.398][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.402][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.407][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.408][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.409][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.412][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.413][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.416][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.418][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.419][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.421][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.424][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.426][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.427][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.428][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.431][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.436][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.437][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.438][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.442][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:01.443][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:01.444][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.445][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.448][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.452][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.454][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.455][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.457][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.459][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.462][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.463][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.465][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.473][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.474][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.477][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.482][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.483][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:05:01.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.543][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.548][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-09-07 16:05:01.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:01.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:01.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:01.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:01.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:01.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:01.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.670][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.674][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.708][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.713][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.718][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:01.719][private$selectFields]
biodb.TRACE[2024-09-07 16:05:01.720][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:01.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:01.722][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:01.724][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.725][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.727][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.732][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.733][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.734][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.737][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.738][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.741][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.743][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.744][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.746][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.747][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.749][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.751][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.752][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.756][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.761][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.762][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.763][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.765][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.767][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.770][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:01.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.775][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.776][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.777][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.780][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.781][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.785][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.786][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.787][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.789][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.792][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.794][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.795][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.799][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.804][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.805][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.806][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:01.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.808][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.810][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:01.811][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:01.812][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.813][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.816][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.817][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.818][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.820][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.822][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.825][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.826][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.828][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.830][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.831][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.832][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.835][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.836][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.839][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.841][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.844][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.845][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:05:01.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:01.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:01.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:01.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:01.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:01.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.891][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.896][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.901][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:01.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:01.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:01.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:01.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:01.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:01.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:01.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-09-07 16:05:01.956][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:01.957][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:01.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:01.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:01.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:01.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:01.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:01.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:01.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:01.987][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:05:01.991][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:01.993][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-09-07 16:05:01.994][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:02.026][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-09-07 16:05:03.043][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:03.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:03.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:03.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:03.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:03.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:03.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:03.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:03.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.097][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.102][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.145][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:03.146][private$selectFields]
biodb.TRACE[2024-09-07 16:05:03.147][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:03.149][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:03.150][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:03.151][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.155][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.159][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.161][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.162][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.164][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.165][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.169][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.170][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.171][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.174][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.180][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.183][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.184][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.186][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.189][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.190][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.193][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.194][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.198][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.202][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.204][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.205][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.208][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.212][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.213][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.214][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.217][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.222][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.223][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.226][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.231][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.232][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.234][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.236][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.237][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:03.238][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:03.240][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.241][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.243][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.248][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.249][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.250][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.253][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.254][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.258][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.259][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.260][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.262][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.263][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.265][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.267][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.268][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.272][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.277][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.278][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:05:03.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.339][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.349][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.416][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-09-07 16:05:03.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:03.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:03.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:03.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:03.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:03.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:03.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.470][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.475][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.520][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:03.521][private$selectFields]
biodb.TRACE[2024-09-07 16:05:03.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:03.523][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:03.525][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:03.526][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.530][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.531][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.534][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.536][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.537][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.539][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.541][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.544][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.545][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.547][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.549][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.552][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.554][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.555][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.559][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.564][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.565][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.566][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.569][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.570][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.574][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.579][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.580][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.581][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.583][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.585][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.589][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.590][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.591][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.594][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.596][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.599][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.600][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.603][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.608][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.610][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.611][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.613][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.615][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:03.616][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:03.617][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.619][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.621][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.626][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.627][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.629][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.631][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.632][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.636][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.637][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.638][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.641][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.646][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.647][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.651][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.652][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.653][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.655][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.657][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:05:03.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.703][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.719][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.724][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.796][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-09-07 16:05:03.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:03.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:03.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:03.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:03.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:03.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:03.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.853][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.902][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:03.903][private$selectFields]
biodb.TRACE[2024-09-07 16:05:03.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:03.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:03.906][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:03.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.911][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.916][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.917][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.919][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.921][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.922][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.926][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.927][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.928][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.931][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.935][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.937][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.940][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.945][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.946][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.948][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.950][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.951][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.953][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:03.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.955][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:03.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.960][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.961][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.962][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:03.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.965][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.966][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:03.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:03.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.970][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.971][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.972][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:03.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.975][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.976][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:03.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.980][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.981][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:03.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:03.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.984][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:03.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.989][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.991][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.992][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:03.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:03.994][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:03.996][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:03.997][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:03.998][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:03.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:04.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.002][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.003][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:04.004][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:04.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.007][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.008][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:04.009][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:04.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.011][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.013][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:04.014][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:04.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.016][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.018][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:04.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:04.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.021][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.022][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:04.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:04.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.026][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:04.029][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.031][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.032][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:05:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:04.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:04.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:04.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:04.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:04.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:04.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:04.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:04.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:04.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:04.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.079][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:04.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:04.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.084][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:04.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:04.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:04.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:04.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:04.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:04.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:04.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:04.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:04.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:04.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:04.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:04.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:04.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:04.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:04.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:04.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:04.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:04.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-09-07 16:05:04.147][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:04.148][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-09-07 16:05:04.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:04.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:04.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:04.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:04.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:04.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:04.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-09-07 16:05:04.179][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-09-07 16:05:04.184][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-09-07 16:05:04.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-09-07 16:05:04.187][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-09-07 16:05:04.219][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-09-07 16:05:05.259][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-09-07 16:05:05.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:05.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:05.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:05.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:05.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:05.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:05.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:05.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.314][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.363][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:05.364][private$selectFields]
biodb.TRACE[2024-09-07 16:05:05.365][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:05.366][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:05.367][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:05.368][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.370][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.372][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.373][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.377][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.378][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.379][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.382][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.383][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.387][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.388][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.389][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.391][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.393][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.396][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.397][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.401][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.406][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.407][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.408][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.411][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.412][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.416][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.420][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.422][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.423][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.425][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.426][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.430][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.431][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.433][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.435][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.438][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.440][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.441][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.445][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.450][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.451][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.452][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.455][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.456][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:05.457][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:05.458][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.462][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.465][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.467][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.468][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.469][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.472][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.473][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.478][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.479][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.481][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.483][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.488][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.489][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.491][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.493][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.494][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.498][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.499][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:05:05.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.563][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.569][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.574][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-09-07 16:05:05.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:05.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:05.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:05.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:05.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:05.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:05.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:05.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.700][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.705][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.743][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.748][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:05.749][private$selectFields]
biodb.TRACE[2024-09-07 16:05:05.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:05.751][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:05.752][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:05.753][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.757][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.762][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.763][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.764][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.767][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.768][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.771][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.772][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.774][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.776][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.781][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.782][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.786][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.790][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.792][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.793][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.795][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.796][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.800][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.805][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.806][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.807][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.810][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.811][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.814][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.816][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.817][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.819][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.820][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.824][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.825][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.829][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.833][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.835][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.836][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:05.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.838][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.839][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:05.841][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:05.842][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.845][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.850][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.851][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.853][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.855][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.856][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.860][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.861][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.862][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.865][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.867][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.869][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.870][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.874][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.877][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.879][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.880][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:05:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:05.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:05.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:05.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.940][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.945][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.950][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:05.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:05.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:05.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:05.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:05.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-09-07 16:05:06.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-09-07 16:05:06.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:06.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:06.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:06.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:06.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:06.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-09-07 16:05:06.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:06.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:06.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.111][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:06.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:06.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.116][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:06.117][private$selectFields]
biodb.TRACE[2024-09-07 16:05:06.118][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-09-07 16:05:06.120][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-09-07 16:05:06.121][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-09-07 16:05:06.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.126][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.127][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.128][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.130][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.131][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.133][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.135][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.136][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.140][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.141][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.142][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.145][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.146][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.149][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.151][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.154][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.159][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.160][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:06.161][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:06.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.164][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.165][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.168][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.171][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-09-07 16:05:06.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.173][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.174][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.176][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.178][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.179][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.183][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.184][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.185][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.188][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.189][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.190][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.192][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.194][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.195][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.197][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.202][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.203][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-09-07 16:05:06.204][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-09-07 16:05:06.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.207][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.208][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:06.209][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-09-07 16:05:06.210][ef$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.214][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.215][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.216][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.219][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.220][ef$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.221][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.223][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.225][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.226][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.228][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.233][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.234][ef$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.238][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.243][ef$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.244][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-09-07 16:05:06.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-09-07 16:05:06.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-09-07 16:05:06.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-09-07 16:05:06.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.285][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-09-07 16:05:06.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-09-07 16:05:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-09-07 16:05:06.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-09-07 16:05:06.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-09-07 16:05:06.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-09-07 16:05:06.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-09-07 16:05:06.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.355][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-09-07 16:05:06.356][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-09-07 16:05:06.358][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-09-07 16:05:06.365][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:05:06.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:05:06.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.370][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:05:06.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:05:06.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-09-07 16:05:06.387][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-09-07 16:05:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-09-07 16:05:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-09-07 16:05:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-09-07 16:05:06.396][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-09-07 16:05:06.398][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2024-09-07 16:05:06.399][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2024-09-07 16:05:06.400][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-09-07 16:05:06.401][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-09-07 16:05:06.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-09-07 16:05:06.404][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-09-07 16:05:06.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-09-07 16:05:06.406][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-09-07 16:05:06.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 371 ]
> 
> proc.time()
   user  system elapsed 
 66.633   5.225 161.381

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.5
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbLipidmaps/DESCRIPTION’ ... OK
* this is package ‘biodbLipidmaps’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbLipidmaps’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbLipidmaps.Rcheck/00install.out

* installing *source* package ‘biodbLipidmaps’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in fun(libname, pkgname) :
  Package 'biodbLipidmaps' is deprecated and will be removed from
  Bioconductor version 3.20
** testing if installed package can be loaded from final location
Warning in fun(libname, pkgname) :
  Package 'biodbLipidmaps' is deprecated and will be removed from
  Bioconductor version 3.20
** testing if installed package keeps a record of temporary installation path
* DONE (biodbLipidmaps)